PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0061s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 369aa    MW: 41028.8 Da    PI: 9.2626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0061s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12139185455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++N+++  L  ++P +     kK +Ka++L +A++Y+k+Lq
  Kalax.0061s0013.1.p 139 DHIVAERKRREKLNQRIIALSAVVPGL-----KKKDKASVLAEAIKYLKQLQ 185
                          5899***********************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17139200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16140202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.86E-12140189No hitNo description
SMARTSM003535.7E-13141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDDESLINQW MTNSHEDLSA LLLPVAAATF SDYDLQHSLL YDYQQPPAKQ LKTNSWDSSC  60
LIDPKPSPDT HNNSAAVTAS FLYPANPPQF TIGTSRLDCT VWNSENDHIL KSGHDHQGAK  120
RKFRITSDAA TNRSSGAQDH IVAERKRREK LNQRIIALSA VVPGLKKKDK ASVLAEAIKY  180
LKQLQERVKT LEEQTKRNKT TQSAVVLRKA KLIIVDDDAN QKPLSGEMFI EGTPTEELLP  240
EIEARVCERN VLIRIHCDKK KGVLEKTLSE IVKLRLTLVS SSVITFASSA LDITIAAQVN  300
FRSRSKARST LINIAHAHLL HTHRQFSSIS LTIKLNNSTI GSAYILLYIY TDLFNFLRAD  360
GGGLLSDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148ERKRRE
2144149RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844450.14e-74PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2I4GKM49e-73A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-45bHLH family protein