PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0061s0039.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 214aa MW: 23490.1 Da PI: 6.6309

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0061s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Kalax.0061s0039.1.p 67 FSCNFCKRKFYSSQALGGHQNAH 89 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.27E-6	64	94	No hit	No description
PROSITE profile	PS50157	11.219	67	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MMILETNEGT ELASATNGGE ESFGGEDGET PEWLNLSLGR EESVPASAED GGSSDGQSTR 60 PVPAKTFSCN FCKRKFYSSQ ALGGHQNAHK RERSAAKRFL SFQAASSPMV RTLGVSAHSA 120 VQKPAGTGRD NNVLTARLLA MARFAHVSSG MGWTGLTLDE AMNMMWPGSF HFRQRQQELQ 180 LQQQQQQEQD KDQQLQQHLP DQHQQKVDLS LRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270534.2	2e-40	PREDICTED: zinc finger protein KNUCKLES
TrEMBL	A0A438FN53	1e-39	A0A438FN53_VITVI; Zinc finger protein 7
TrEMBL	F6H699	1e-39	F6H699_VITVI; Uncharacterized protein
STRING	VIT_03s0091g00260.t01	2e-40	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	1e-19	zinc finger protein 7

Link Out ? help Back to Top
Phytozome	Kalax.0061s0039.1.p