PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0061s0120.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 640aa    MW: 71397.4 Da    PI: 4.798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0061s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000334644961755
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          N++f++Lr+++P+a   +    +K ++Le+++ ++++L+
  Kalax.0061s0120.2.p 464 NERFSTLRSMIPSA---G---ADKESVLEETIMHVQKLE 496
                          99***********9...5...678889999999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5027213IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474599.42E-5464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-5464510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MVGEVIGLRM DKDQEEMEDV RLAPGNLRQL LGVTVRSVQW SYAIFWSMSR TKQGVLEWGD  60
GYYNGDIKTR KISQAMDVVK ADKMGLERSK LLRELYELLL EGENCEEEQQ AASPSNADLC  120
PEDLSDAEWY YMVCMSFEFN PGQGLPGRAL ANGQTIWLRN AQYADGKLFT RSLLAKSASV  180
QTVLCFPYLG GVMELGTTEL VLEDPALIQR VKTSLLEFSK PGCNVNWTFG PYSTDSDEDP  240
VCVDAKMNTL QNVQLGAENI KVEDEEMRLD GHSEDSDEEL GAGLPDCSSD TSGGNHQSHV  300
YSWHLTDGYF GADFLGFTNS SDCASQVVES PADTKISEPR SGSPNAQNCL QETNCIKPDA  360
QDNGSSDDLH YRKVISTILR KSNQLTGSLG CSASGYACRS GFGAWKNRRV VTSRRLLDRQ  420
RILKKTLFTI PLMYSKGFIK PETEQIGKKA GDKPNDGKSR ILENERFSTL RSMIPSAGAD  480
KESVLEETIM HVQKLEARLG ELESSVGNTR QDPKWEPSRL PRDDTAEQVS DNSESERKIL  540
KQKRKVYECE TASEVNSSLK VVIMEQEVSI EVTCRCREYL LLDIMDAVNR LQLDAHLVHS  600
ATHEELFTLK LKSKFRGTGV VPSGRVVKQM IWESICEEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-19272199195Transcription factor MYC3
4rqw_B9e-19272199195Transcription factor MYC3
4rru_A1e-182721148227Transcription factor MYC3
4rs9_A9e-19272199195Transcription factor MYC3
4ywc_A1e-182721148227Transcription factor MYC3
4ywc_B1e-182721148227Transcription factor MYC3
4yz6_A9e-19272199195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969803.11e-173PREDICTED: transcription factor EGL1
TrEMBLF6I6291e-170F6I629_VITVI; Uncharacterized protein
STRINGVIT_15s0046g02560.t011e-171(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-111bHLH family protein