PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0061s0147.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 289aa MW: 33217.6 Da PI: 9.2533

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0061s0147.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.9e-27	37	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA + GF +rk+ +++s+r+gei+++++vC+keg+++ e+++ ++++++r rtgC ak+++ ++ +gkw v+k+ eHnH+l+ Kalax.0061s0147.1.p 37 AYNQYAARRGFGIRKHFTTRSRRSGEIIRKEYVCNKEGFKKVESQT-TDHKKRRRDARTGCLAKMEIGQK-SGKWIVDKFTDEHNHPLT 123 5***************************************9999.99999999*********99.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-25	37	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-9	245	284	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEFGSTDNDA IFDASCEKAV DSLSGKYYDT MEEAYDAYNQ YAARRGFGIR KHFTTRSRRS 60 GEIIRKEYVC NKEGFKKVES QTTDHKKRRR DARTGCLAKM EIGQKSGKWI VDKFTDEHNH 120 PLTSPNKVMK HRSHCKYHKS VEGKKLIYDL HAAGLTPSQI TKAVNTLTSN LHEDITAKKC 180 SEVLRTQKRY HVGKECLGII KHFQEKAGRG DDFYFNVQLD NDGCLRNVFW ADERSRTSYL 240 EFGDVMVFDV TYRTNKFKMP FSPFVGVNHH RQSVLFGGAL LDAEIFCY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733474.1	9e-98	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_023745122.1	6e-97	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-49	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0061s0147.1.p