PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0065s0107.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 655aa    MW: 71740.9 Da    PI: 6.9617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0065s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.38.1e-20515612296
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  +
  Kalax.0065s0107.1.p 515 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--S 601
                          79*************************999999********7778*******99777777777777.********************..6 PP

                          S.SEE..EEEE CS
                   B3  87 r.sefelvvkv 96 
                          + ++++++++ 
  Kalax.0065s0107.1.p 602 DiKCGKYMIRG 612
                          77999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-27508618IPR015300DNA-binding pseudobarrel domain
CDDcd100157.88E-34512613No hitNo description
SuperFamilySSF1019366.47E-22513607IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.306514616IPR003340B3 DNA binding domain
SMARTSM010196.5E-19514616IPR003340B3 DNA binding domain
PfamPF023624.5E-16515611IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MLDLSCFGGG GYDSAAAAME EADHQDLMDS AAAIFCDDLI PPLPDFQCMS SSSSSSSSVK  60
PVAYQSTASS SVSSTSSSWA VLRSESEEHN AAAGGYTSHH DHSHGHHPQQ VVREQSNGLD  120
EDGDIGCMDV METLSYIDLL DESGQVWGYK DSPVFYSSPV EAFQAENELQ RPETMAETHT  180
EGLDKSEDLA VVFFEWLKSN KESISAEDLR SIKLKKSTIE SAAKRLGNGK EGMKRLLQLI  240
LEWVQHHQLQ RKPSRAEGEA AAAAQPQFPN HPYPDTNNFQ PDLSHTSPWS VGSSAGLDPM  300
MAVGVPAPFG HLSNMADQPW PPLCMNYNNS ANAGQNLTPA AHPFGAAAFN QYPCQYYPAV  360
GNVSYVNGAV SEEVFVRTGS AATKEARKKR MARQRRFLPH HRHHHHHSSS GTGNAHGQHH  420
GSNGLSNQMR MLTGAGQLGR VNMDESCANI SHPPSGGYWA YLRNASPPQP PHFPVVPNSG  480
NSIQGNEESP SYQRPIALDR RQGSKPEKNL RFLLQKVLKQ SDVGSLGRIV LPKKEAETHL  540
PQLTARDGIN IAMEDIGTSN VWNMRYRFWP NNKSRMYLLE NTGDFVRSNG LQEGDFIVIY  600
SDIKCGKYMI RGVKVRQQGL KPDIRRSGKA LKKNTWPTSD GSPFAPPSPK TPLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-375106181109B3 domain-containing transcription factor FUS3
6j9b_D1e-375106181109B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907276.11e-144B3 domain-containing transcription factor ABI3
TrEMBLA0A1U7ZE451e-138A0A1U7ZE45_NELNU; B3 domain-containing transcription factor ABI3
STRINGevm.model.supercontig_8.1871e-143(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-80B3 family protein