PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0067s0049.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20196.9 Da    PI: 8.4658
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0067s0049.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.2e-261059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n + rqvtfskRrng+lKKA+EL +LCdaev v++fsstgk+++++s
  Kalax.0067s0049.2.p 10 RIDNPTSRQVTFSKRRNGLLKKANELAILCDAEVGVMVFSSTGKVHDFAS 59
                         8***********************************************86 PP
2K-box80.34.5e-2775169498
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                           ++++ ++++ e +q+e+a L+++++++q+++R+l G+dL+ L +keLq Le++L+ksl++iR++K++ll++qi el  k + +++en +
  Kalax.0067s0049.2.p  75 EQQQQDSSSEIEFWQREAAMLRQQLQSIQESHRQLTGDDLSGLGIKELQDLETHLDKSLRSIRTTKDKLLTDQILELNAKGNIVRQENLE 164
                          4444578999******************************************************************************** PP

                K-box  94 Lrkkl 98 
                          L +k+
  Kalax.0067s0049.2.p 165 LYQKV 169
                          **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.698161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.54E-41278No hitNo description
SuperFamilySSF554552.88E-31289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-2581169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.23385175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRGKVVIRR IDNPTSRQVT FSKRRNGLLK KANELAILCD AEVGVMVFSS TGKVHDFAST  60
SMTSVIDRYS KSKEEQQQQD SSSEIEFWQR EAAMLRQQLQ SIQESHRQLT GDDLSGLGIK  120
ELQDLETHLD KSLRSIRTTK DKLLTDQILE LNAKGNIVRQ ENLELYQKVS LIYDLVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20186186MEF2C
5f28_B1e-20186186MEF2C
5f28_C1e-20186186MEF2C
5f28_D1e-20186186MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022637856.13e-89MADS-box transcription factor 23-like isoform X1
RefseqXP_022637858.12e-89MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP491e-85MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A3Q0F1L06e-88A0A3Q0F1L0_VIGRR; MADS-box transcription factor 23-like isoform X3
TrEMBLA0A3Q0F2Y86e-88A0A3Q0F2Y8_VIGRR; MADS-box transcription factor 23-like isoform X1
STRINGEOY155232e-87(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-70AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]