PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0068s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 240aa    MW: 26427.1 Da    PI: 9.5505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0068s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-1174122355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+ Vr ++ +g+Wv+eIr p++   r r++lg+f  ae+A +a++ a  +++g
  Kalax.0068s0026.1.p  74 YREVRMRS-WGKWVSEIRQPRK---RSRVWLGTFPNAEMADRAHEVASFAFKG 122
                          66699888.**********954...5******************998777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.15273130IPR001471AP2/ERF domain
SMARTSM003806.9E-2973136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2674131IPR001471AP2/ERF domain
CDDcd000181.97E-2674132No hitNo description
PRINTSPR003671.4E-77485IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1674131IPR016177DNA-binding domain
PfamPF008475.3E-677120IPR001471AP2/ERF domain
PRINTSPR003671.4E-796112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDIQTPLIST LLDPLKSQLV CDANQQERRR RCKRGSIFLT SVVFSSYLMA EYVSNLRAKE  60
ERRGGRNDGK PLAYREVRMR SWGKWVSEIR QPRKRSRVWL GTFPNAEMAD RAHEVASFAF  120
KGKSAHLNFP HLVPHLPQPA SLLPSHIRAA ASKAAAMTHL TSCPPTQVKP AELSDDHSPA  180
EAVMSWSADQ EAQQGSYWNE MGSGLVELPS LAESEALQSC VGRVADHGFG RVLGLGGHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1463131373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626957.13e-38PREDICTED: ethylene-responsive transcription factor ERF043-like
TrEMBLA0A0D3BLR58e-37A0A0D3BLR5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BQJ98e-37A0A3P6BQJ9_BRACM; Uncharacterized protein
STRINGBo3g171090.11e-37(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.16e-34ERF family protein