PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0068s0076.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 446aa    MW: 49717 Da    PI: 4.8097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0068s0076.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14246292455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0068s0076.4.p 246 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 292
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.79242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-19242310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-15245296No hitNo description
Gene3DG3DSA:4.10.280.107.1E-19246309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-12246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSSNNNHSNP GNNDEDEDEE EENEEPGGLD SEAGTGRVSG RVAGEVSELM QMEISDLDIR  60
VRSPEDASNN LEPDFNVLPA SRIQKNKDDG HFTTESYKID SARRWALMQN QMRTGGVHLL  120
QPPPFSETQL LEDLTQEDSH YSHTVSSILH HHQQPPLPES FFSAEDLILS ADSAFAKWTL  180
YGDQVAATTT GGAGSQWLLK FILFTVPYLH GKYPEENEPC KSADMSEAAQ QLKKGAGAPQ  240
EDMSVNHVLA ERRRREKLNE RFVILRSLVP FVTKMDKASI LGDTIEYLKQ LRRKIQDLEV  300
KAKQMEVEQR SGLTSQDRTW SGTGSEKRKM RAVEVTGSPK PVTVVEPPPP PPPVELLGLM  360
DANTVQVSII ETDALVELQC PYREALLLDV MMKLRDLRIE VTAVQSSVTD GSFVAELRAK  420
VKENVNGKKM KIAEVKRAIY QIIPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14245295757Transcription factor MYC2
5gnj_B2e-14245295757Transcription factor MYC2
5gnj_E2e-14245295757Transcription factor MYC2
5gnj_F2e-14245295757Transcription factor MYC2
5gnj_G2e-14245295757Transcription factor MYC2
5gnj_I2e-14245295757Transcription factor MYC2
5gnj_M2e-14245295757Transcription factor MYC2
5gnj_N2e-14245295757Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255ERRRRE
2251256RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892114.11e-126basic helix-loop-helix protein A
SwissprotE3SXU41e-105BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0C7DV441e-138A0A0C7DV44_RIBNI; BHLH3 protein (Fragment)
STRINGVIT_07s0104g00090.t011e-125(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-54bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]