PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0070s0064.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 512aa    MW: 57643.2 Da    PI: 6.8765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0070s0064.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.73.6e-31202306199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++  
  Kalax.0070s0064.2.p 202 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSANEKGLLLNFEDRRGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDPGDIVSFQRGv 291
                          89***************************966667889*************************************************654 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+  + +l++ ++r+
  Kalax.0070s0064.2.p 292 GEmFKDRLFIDWRRR 306
                          766677788888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-41194308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-29199292IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-25200296No hitNo description
PROSITE profilePS5086314.325202307IPR003340B3 DNA binding domain
SMARTSM010191.6E-23202307IPR003340B3 DNA binding domain
PfamPF023621.1E-28202306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MFDFSLFVFR NISTPTDNLS FFLIYHLPSS TQYQLKLQPS KSEFSRHSID PKSALLSSYS  60
MDRGSNSEGE RHDDLHHQHH HIHQQQPAPS ASGGGSYPVT SSSPSSLHFS PFSFSHHDLL  120
SPSNPYPPQT RDWFATSPAV VEDSASFRSS HNYFMEGNDD DDDDVRRRIE QQHSSSSYYN  180
SQTSSQHAQT LAVDQIEKEH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DSSANEKGLL  240
LNFEDRRGKS WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD PGDIVSFQRG VGEMFKDRLF  300
IDWRRRPSNP LLYHHDPSLT ISSLSLPPQY FPFHQTRPAP WGTSTPLYLR PVAQLSSGHQ  360
FPQHNFHSHF YHYNQYQQQQ QQQGAYSPYN NNDGFITYPH GSVAVGSSSP TVLYLRSSAD  420
EGRSGGDVGN SSTVFDSVPA IHQKAEGKKL RLFGVNMECE NPPSTLDEQS EDLSSSPTPA  480
TASSPPESPR IQSDDGSVPG GGSKGNMSLS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-641973073114B3 domain-containing transcription factor NGA1
5os9_B5e-641973073114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839976.13e-85PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_019072394.13e-85PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ9MAN17e-68NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A2I4G7V06e-84A0A2I4G7V0_JUGRE; B3 domain-containing protein Os03g0120900-like
TrEMBLA5APE82e-83A5APE8_VITVI; Uncharacterized protein
TrEMBLF6HU981e-83F6HU98_VITVI; Uncharacterized protein
STRINGVIT_02s0025g03000.t012e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.13e-66B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]