PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0070s0072.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 693aa    MW: 74780.5 Da    PI: 9.5389
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0070s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.6e-2970154187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+ aL+++r+em++++r++ lk+plWeevs+k+ e g+ rs k+Ckek+en++k+yk++keg+ +r  ++ +t+++f++lea
  Kalax.0070s0072.1.p  70 RWPRQETVALLKIRSEMDSAFRDATLKGPLWEEVSRKLGELGYVRSGKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYRFFTHLEA 154
                          8********************************************************************98..56667******985 PP
2trihelix107.11.2e-33508593187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k evlaLi++r+++e+r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Kalax.0070s0072.1.p 508 RWPKVEVLALIKLRSNLENRYQEAGPKGPLWEEISAGMRQMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFNELDA 593
                          8*********************************************************************8.99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7663127IPR017877Myb-like domain
SMARTSM007170.005167129IPR001005SANT/Myb domain
CDDcd122038.45E-2869134No hitNo description
PfamPF138373.1E-1969155No hitNo description
PROSITE profilePS500907.166501565IPR017877Myb-like domain
SMARTSM007170.0026505567IPR001005SANT/Myb domain
PfamPF138371.7E-23507594No hitNo description
CDDcd122033.79E-30507572No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MQQQQGSQYG GVSPDLGSAP RTQMLAAGGG GSEQAEAASP ISSRPPASIM NFDDLVDDTD  60
RAGSTSSGNR WPRQETVALL KIRSEMDSAF RDATLKGPLW EEVSRKLGEL GYVRSGKKCK  120
EKFENVHKYY KRTKEGRAGR QDGKTYRFFT HLEALQAVTA SGSGSGSTNL IPSAATPPPP  180
PLLMTSSGPP AAAASPLRNM QFATPVSVGI GGNIVMQMAG VAPPSQPFTM YSRDLSMGAG  240
VSVPGSMSAA APAPSVAPVG ISFSSGSSSS GSYDSDEDEE EVDDVSEEER PSSTPVGSGQ  300
KRKRGYSFSS RGGGTKRRMM DFFEGLMKQV MQKQEAMQQR FLEAIEKREQ DRVMREEAWK  360
RQEAARLSRE QELMVQERAT AASRDAAIVS FLQKITGQTI QLPQPVSHQN VAVTPAAPPP  420
SVPTMPPAAP ASIPSSTSPP SRQQFQQKQH KSQQQKQQPQ NTDLVRQHQM PPPPSTEAIM  480
AVPERQIPPQ DPPSGGGGGS YSEAASSRWP KVEVLALIKL RSNLENRYQE AGPKGPLWEE  540
ISAGMRQMGY SRSSKRCKEK WENINKYFKK VKESNKKRPE DAKTCPYFNE LDALYQKKIL  600
GGAYSGSSSI MVPFQQQQQP QQGLSVDQSK NQETSISNVG VVQTSAAAQV ESADKRDGTD  660
LEQPNNGGLP DSIFEDQGGN AGATGGSRKR TS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470851.10.0PREDICTED: trihelix transcription factor GTL1 isoform X2
TrEMBLA0A2H4NFV40.0A0A2H4NFV4_FRAAN; Trihelix transcription factor GT-2F
TrEMBLA0A2I4GLZ20.0A0A2I4GLZ2_JUGRE; trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A2P6P4D70.0A0A2P6P4D7_ROSCH; Putative transcription factor MYB family
TrEMBLV4SWV00.0V4SWV0_9ROSI; Uncharacterized protein
STRINGXP_004309494.10.0(Fragaria vesca)
STRINGXP_006439158.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-46Trihelix family protein