PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0070s0072.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 510aa MW: 55123.6 Da PI: 9.3294

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0070s0072.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	107.8	7.4e-34	325	410	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+++e+r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Kalax.0070s0072.2.p 325 RWPKVEVLALIKLRSNLENRYQEAGPKGPLWEEISAGMRQMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFNELDA 410 8*******************************************************************8.99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.166	318	382	IPR017877	Myb-like domain
SMART	SM00717	0.0026	322	384	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-23	324	411	No hit	No description
CDD	cd12203	5.98E-31	324	389	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MTSSGPPAAA ASPLRNMQFA TPVSVGIGGN IVMQMAGVAP PSQPFTMYSR DLSMGAGVSV 60 PGSMSAAAPA PSVAPVGISF SSGSSSSGSY DSDEDEEEVD DVSEEERPSS TPVGSGQKRK 120 RGYSFSSRGG GTKRRMMDFF EGLMKQVMQK QEAMQQRFLE AIEKREQDRV MREEAWKRQE 180 AARLSREQEL MVQERATAAS RDAAIVSFLQ KITGQTIQLP QPVSHQNVAV TPAAPPPSVP 240 TMPPAAPASI PSSTSPPSRQ QFQQKQHKSQ QQKQQPQNTD LVRQHQMPPP PSTEAIMAVP 300 ERQIPPQDPP SGGGGGSYSE AASSRWPKVE VLALIKLRSN LENRYQEAGP KGPLWEEISA 360 GMRQMGYSRS SKRCKEKWEN INKYFKKVKE SNKKRPEDAK TCPYFNELDA LYQKKILGGA 420 YSGSSSIMVP FQQQQQPQQG LSVDQSKNQE TSISNVGVVQ TSAAAQVESA DKRDGTDLEQ 480 PNNGGLPDSI FEDQGGNAGA TGGSRKRTS*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MTSSGPPAAA ASPLRNMQFA TPVSVGIGGN IVMQMAGVAP PSQPFTMYSR DLSMGAGVSV  60
PGSMSAAAPA PSVAPVGISF SSGSSSSGSY DSDEDEEEVD DVSEEERPSS TPVGSGQKRK  120
RGYSFSSRGG GTKRRMMDFF EGLMKQVMQK QEAMQQRFLE AIEKREQDRV MREEAWKRQE  180
AARLSREQEL MVQERATAAS RDAAIVSFLQ KITGQTIQLP QPVSHQNVAV TPAAPPPSVP  240
TMPPAAPASI PSSTSPPSRQ QFQQKQHKSQ QQKQQPQNTD LVRQHQMPPP PSTEAIMAVP  300
ERQIPPQDPP SGGGGGSYSE AASSRWPKVE VLALIKLRSN LENRYQEAGP KGPLWEEISA  360
GMRQMGYSRS SKRCKEKWEN INKYFKKVKE SNKKRPEDAK TCPYFNELDA LYQKKILGGA  420
YSGSSSIMVP FQQQQQPQQG LSVDQSKNQE TSISNVGVVQ TSAAAQVESA DKRDGTDLEQ  480
PNNGGLPDSI FEDQGGNAGA TGGSRKRTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022722466.1	1e-122	trihelix transcription factor GTL1-like
Refseq	XP_022722475.1	1e-122	trihelix transcription factor GTL1-like
TrEMBL	A0A1U8MJ62	1e-118	A0A1U8MJ62_GOSHI; trihelix transcription factor GTL1-like isoform X2
STRING	Gorai.008G262400.1	1e-117	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-48	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0070s0072.2.p