PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0070s0076.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 257aa MW: 28130.4 Da PI: 7.6948

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0070s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.8	7.4e-36	52	105	7	60
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +c rC stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvG+g+rk+++ Kalax.0070s0076.1.p 52 HCQRCGSTNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGSGCRKSRR 105 7**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-20	36	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.363	51	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-30	52	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSLLRCPDVA SPQLDRLTAA TVTSPGVSCD RHVTGSVLMR MERSEGVDVS PHCQRCGSTN 60 TKFCYYNNYS LTQPRYFCKG CRRYWTKGGS LRNVPVGSGC RKSRRGRSTS ASRYHHHHRS 120 PSTANMGSTS LAASSFTDDS SSTGQAVDLA AVYANFLKQE PTQELEPANA VLTGPIGYQA 180 MTTRCAEMRR IDSNRVVPFE LPPLPNEEGL WFSQAADWFG SQLVGSNEPP SIDVFNQDSG 240 DVDQLVASWS PFDFPI*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.0070s0076.1.p