PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0072s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 233aa    MW: 26257.4 Da    PI: 7.9713
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0072s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-203495157
                         TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++ R+++t+eq+++L elF+   r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0072s0052.1.p 34 KCGRWNPTAEQVKVLTELFRAgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 95
                         568*****************99**************************************97 PP
2Wus_type_Homeobox1131.6e-363497265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++ RW+Pt+eQ+k+L+el+++GlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+
  Kalax.0072s0052.1.p 34 KCGRWNPTAEQVKVLTELFRAGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 97
                         678***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.9813196IPR001356Homeobox domain
SMARTSM003893.5E-433100IPR001356Homeobox domain
PfamPF000467.5E-183595IPR001356Homeobox domain
SuperFamilySSF466892.22E-113698IPR009057Homeodomain-like
CDDcd000863.72E-53797No hitNo description
Gene3DG3DSA:1.10.10.603.3E-83795IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSGAVGGFYL KTSATRNSNT SNNTTTGSGG AGTKCGRWNP TAEQVKVLTE LFRAGLRTPS  60
TDQIQKISSQ LSFYGKIESK NVFYWFQNHK ARERQKRRRA SPDEDDDVEQ LHVMVRKDEK  120
ISSARCKHSH NLYSLNFTSH LISSDIINIY IYICLWYGDS VLQERNQGPD ETERAIETLQ  180
LFPVDISQPK AMEFSVVAGG DYENTTAKCA YKLATYELNN EHPPLDLRLS FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.11e-45WUSCHEL related homeobox 5