PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0072s0099.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 386aa    MW: 42071.9 Da    PI: 4.2632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0072s0099.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10191238355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +    ErrRR r+++ ++ Lr+l+P+      +K++ a+i+  A+ Y++sLq
  Kalax.0072s0099.1.p 191 SKRIVSERRRRGRMKDNLHALRSLVPSI-----TKMDRASIVGDAILYVQSLQ 238
                          556678*********************7.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.335188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15188255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-11190238No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16190254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8192238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDGIHSSSTG HNHLAPPAII PDDFGCLRDD FITAYDFDQL LELIRDDDKE EGSADPAVAD  60
AYGSRCVEQQ QQLLTIQDYE VDRLMMSVVE IESRRFDSDE HELVVVDAAA LQPQISAIDM  120
FAASFGGGEF DNAAVDLDGC MGDDSVPCMV DALGVGEDDD DEDDGGVDGN DSIGNTTMIS  180
TTKTTGKTDR SKRIVSERRR RGRMKDNLHA LRSLVPSITK MDRASIVGDA ILYVQSLQSK  240
ANRLKVELAE LEASAARQGL NATEPPNSNF HIATSGANKR STLPVPCYIK QMDACQVGEG  300
EFYVKLVSNK GEEIAACLHK AIESLRDGFT VQSSNLSLVS DDYALTFTLR VKDGVEEMNL  360
PNLNMWLSRA LHGHDFILEM SPSIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857086.17e-58PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A2I4HLP82e-56A0A2I4HLP8_JUGRE; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
STRINGVIT_06s0061g00720.t017e-55(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-43FER-like regulator of iron uptake