PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0074s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 155aa MW: 16403.9 Da PI: 6.7942

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0074s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.7	9.5e-21	19	69	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd n++ r++lg+f+ta eAa+a+++a+ +++g+ Kalax.0074s0010.1.p 19 YRGVRRRP-WGKYAAEIRDS--NNQGVRVWLGTFDTALEAARAYDQAAYNMRGA 69 9*****.******4..2345***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.4E-15	18	68	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.84	18	76	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-32	18	82	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-31	18	78	IPR001471	AP2/ERF domain
CDD	cd00018	4.31E-27	19	76	No hit	No description
PRINTS	PR00367	6.7E-11	19	30	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.47E-22	19	77	IPR016177	DNA-binding domain
PRINTS	PR00367	6.7E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0010186	Biological Process	positive regulation of cellular defense response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0090332	Biological Process	stomatal closure
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDSSNHVRNS SGGGGEVSYR GVRRRPWGKY AAEIRDSNNQ GVRVWLGTFD TALEAARAYD 60 QAAYNMRGAM AVLNFPKEYK LTPNGAVNNN AASSSGPGRT KEVIEFECLD DQVLEDMLAR 120 DDGPNGFGNV YTGGGGGGSN VHNGNVYSGG GHRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-34	18	125	14	126	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00029	PBM	Transfer from AT5G43410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733438.1	2e-45	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LSX0	9e-34	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A2J6KGH7	5e-44	A0A2J6KGH7_LACSA; Uncharacterized protein
STRING	GLYMA20G34560.1	2e-39	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	1e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.0074s0010.1.p

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]