PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0076s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 197aa MW: 22896.1 Da PI: 9.7954

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0076s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	17	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrFhPtdeelv +yL++kve+k+l++ e ik++d+yk++PwdLp ++v ++++ewyfF+ r +ky+++ r+nr+t sg+Wkatg d Kalax.0076s0001.1.p 17 MLPGFRFHPTDEELVAFYLTRKVENKQLSI-ELIKQIDLYKYDPWDLPtTSVGTGDQEWYFFCLRGRKYRNSVRPNRVTGSGFWKATGID 105 579*************************.89***********7789999******************************* PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Kalax.0076s0001.1.p 106 KPIYSFkqPHEFIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146 96334455*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-52	16	153	IPR003441	NAC domain
PROSITE profile	PS51005	49.52	17	170	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	19	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNMYDEKKQD HDKDEVMLPG FRFHPTDEEL VAFYLTRKVE NKQLSIELIK QIDLYKYDPW 60 DLPTTSVGTG DQEWYFFCLR GRKYRNSVRP NRVTGSGFWK ATGIDKPIYS FKQPHEFIGL 120 KKSLVYYRGS AGKGTKTDWM MHEFRLPPQR RNSAGQQPQQ HSSLAKSSNI ALEAVSFLPS 180 LPLYSSRTNQ FILPYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	19	154	19	151	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	19	154	19	151	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	19	154	19	151	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	19	154	19	151	NO APICAL MERISTEM PROTEIN
3swm_A	3e-48	19	154	22	154	NAC domain-containing protein 19
3swm_B	3e-48	19	154	22	154	NAC domain-containing protein 19
3swm_C	3e-48	19	154	22	154	NAC domain-containing protein 19
3swm_D	3e-48	19	154	22	154	NAC domain-containing protein 19
3swp_A	3e-48	19	154	22	154	NAC domain-containing protein 19
3swp_B	3e-48	19	154	22	154	NAC domain-containing protein 19
3swp_C	3e-48	19	154	22	154	NAC domain-containing protein 19
3swp_D	3e-48	19	154	22	154	NAC domain-containing protein 19
4dul_A	2e-48	19	154	19	151	NAC domain-containing protein 19
4dul_B	2e-48	19	154	19	151	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429800.1	1e-85	PREDICTED: transcription factor JUNGBRUNNEN 1
Refseq	XP_022637360.1	1e-85	transcription factor JUNGBRUNNEN 1 isoform X2
Swissprot	Q9SK55	4e-73	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0L9UUN9	3e-84	A0A0L9UUN9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RJV8	3e-84	A0A0S3RJV8_PHAAN; Uncharacterized protein
STRING	XP_007141427.1	4e-84	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-75	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Kalax.0076s0001.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]