PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0076s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 290aa    MW: 30418.5 Da    PI: 9.7394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0076s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-0799124227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          k ++C+ f     Ck+Gd+C+FaHg+
  Kalax.0076s0022.1.p  99 KSRICNKFNSAEGCKFGDKCHFAHGE 124
                          5689999999999***********96 PP
2zf-CCCH32.11.9e-10256280126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC +f + G C +GdrC+FaHg
  Kalax.0076s0022.1.p 256 YKTKLCENFGK-GSCTFGDRCHFAHG 280
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.53259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3523260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-63358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-83457IPR000571Zinc finger, CCCH-type
PfamPF146080.524057No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-1295127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-796127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18897125IPR000571Zinc finger, CCCH-type
SMARTSM003560.01199124IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-599124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.101.3E-16165235IPR004088K Homology domain, type 1
SMARTSM003221.3E-12165235IPR004087K Homology domain
SuperFamilySSF547912.19E-15166245IPR004088K Homology domain, type 1
PROSITE profilePS5008414.571166230IPR004088K Homology domain, type 1
CDDcd001053.33E-15168230No hitNo description
PfamPF000131.1E-11168232IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-16252285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-9254285IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211255282IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8256280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDARKRGRLD SGFNGNGGFK KPKPELDSTG IGSKSKPCTK FFSTSGCPFG EGCHFAHYVP  60
GGYSAVAQMS NMGPAAVPPT RGMTAPPPMK NGSAPPAVKS RICNKFNSAE GCKFGDKCHF  120
AHGEWEIGKP VAPSFDDHRG MGPTAGRGGR MMDPSFPAPP SGFGVNATTK ISVDASLAGA  180
IIGKGGVNSK QICRQTGVKL SIRDHESDPN LRNIELEGSF EQISQASGMV RELIVNVSPM  240
SSAAPTKMRA HASSNYKTKL CENFGKGSCT FGDRCHFAHG AAELRTSTT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496269.11e-150zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3TR751e-149A0A1S3TR75_VIGRR; zinc finger CCCH domain-containing protein 14 isoform X1
STRINGcassava4.1_012954m1e-148(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-82C3H family protein