PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0076s0022.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 222aa    MW: 23263.4 Da    PI: 9.4633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0076s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-073156227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         k ++C+ f     Ck+Gd+C+FaHg+
  Kalax.0076s0022.2.p 31 KSRICNKFNSAEGCKFGDKCHFAHGE 56
                         6689999999999***********96 PP
2zf-CCCH32.61.3e-10188212126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC +f + G C +GdrC+FaHg
  Kalax.0076s0022.2.p 188 YKTKLCENFGK-GSCTFGDRCHFAHG 212
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-132759IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-72859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1882957IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-53156IPR000571Zinc finger, CCCH-type
SMARTSM003560.0113156IPR000571Zinc finger, CCCH-type
SMARTSM003221.3E-1297167IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.4E-1797167IPR004088K Homology domain, type 1
SuperFamilySSF547911.26E-1598177IPR004088K Homology domain, type 1
PROSITE profilePS5008414.57198162IPR004088K Homology domain, type 1
PfamPF000136.9E-12100164IPR004088K Homology domain, type 1
CDDcd001051.69E-15100162No hitNo description
Gene3DG3DSA:4.10.1000.102.0E-16184217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211187214IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6187213IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8188212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSNMGPAAVP PTRGMTAPPP MKNGSAPPAV KSRICNKFNS AEGCKFGDKC HFAHGEWEIG  60
KPVAPSFDDH RGMGPTAGRG GRMMDPSFPA PPSGFGVNAT TKISVDASLA GAIIGKGGVN  120
SKQICRQTGV KLSIRDHESD PNLRNIELEG SFEQISQASG MVRELIVNVS PMSSAAPTKM  180
RAHASSNYKT KLCENFGKGS CTFGDRCHFA HGAAELRTST T*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350859.11e-110zinc finger CCCH domain-containing protein 31 isoform X4
SwissprotQ7F8R04e-75C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLI1N9801e-106I1N980_SOYBN; Uncharacterized protein
STRINGGLYMA19G32910.11e-106(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-63C3H family protein