PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0079s0014.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 791aa MW: 90929.6 Da PI: 8.2158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0079s0014.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88	1.4e-27	58	145	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e + + ++r+ + ++t+Cka+++vkk+ gkw+v+++++eHnHel Kalax.0079s0014.3.p 58 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGISPEPDCT---SSRRPTLKKTNCKASMHVKKRPGGKWVVYSFVKEHNHELL 144 5***************************************99998...7788899*****************************97 PP FAR1 91 p 91 p Kalax.0079s0014.3.p 145 P 145 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-25	58	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-22	265	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.324	546	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.7E-7	553	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-6	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MVDHVQENHT YDGLNTNEAA ALLHKYGGAV DILEGDALQI EGEPHGGIEF ECHEAAYSFY 60 QEYAKSMGFT TSIKNSRRSK KSKEFIDAKF ACSRYGISPE PDCTSSRRPT LKKTNCKASM 120 HVKKRPGGKW VVYSFVKEHN HELLPALAYH FRIHKNVKVA EKNNIDILHA VSERTRKMYV 180 EMSRHSSEFW SFEFLKTDTV SQFDRGLHLA LDVGDAQFIL EYFKHVKKDS PGFLYAIDLN 240 EEHRLRNLFW VDAKSRSDYS SFSDVISLES CYIKNNNKMP FVPFVGVNNH FQPILLGCAL 300 VADDSKSTFV WLMKTWLRAM GGLAPKVIIT DHDQAMKMAV EEVFSTSCHC FSLHNILEKA 360 SEILIHVIQC HPKFLQKFNK CIFKSWTEED FDMRWWKMIG RFELQEYEWI RLLYDHRKKW 420 VPTYMKGTFL GGMCPIQRSE SMSAFLDRYI HKKITLKEFV RQYGTILHNI FEDEALADFD 480 TWHKQPALKS PSPWEKQVSA LYTHAIFKKF QVEVLGVVGC HIEKVGDDGT TVTFKVQDCE 540 KNERFYVAWI EAKSEVYCSC RSFEYRGFLC RHAMIVLQIC GFSSIPSQYI LTRWTKDAKS 600 MQSSSIGAIR VEDRIQRYNY LCKRAIELCE EGSLSQDNYS VAIRFLVEAL KNCVNENDSN 660 KNVGESNNAS ILKEHHGSLA FKRNKKRIPN KKRRALSETE FSADTSSNLH QMVPLNLMEP 720 PHDAYYINQQ SLQGLLTNIA SGHDIFFGPQ QSTRSINNLD FRVQANFTYG VQENTGSSPS 780 HVHGSSSGRA *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MVDHVQENHT YDGLNTNEAA ALLHKYGGAV DILEGDALQI EGEPHGGIEF ECHEAAYSFY  60
QEYAKSMGFT TSIKNSRRSK KSKEFIDAKF ACSRYGISPE PDCTSSRRPT LKKTNCKASM  120
HVKKRPGGKW VVYSFVKEHN HELLPALAYH FRIHKNVKVA EKNNIDILHA VSERTRKMYV  180
EMSRHSSEFW SFEFLKTDTV SQFDRGLHLA LDVGDAQFIL EYFKHVKKDS PGFLYAIDLN  240
EEHRLRNLFW VDAKSRSDYS SFSDVISLES CYIKNNNKMP FVPFVGVNNH FQPILLGCAL  300
VADDSKSTFV WLMKTWLRAM GGLAPKVIIT DHDQAMKMAV EEVFSTSCHC FSLHNILEKA  360
SEILIHVIQC HPKFLQKFNK CIFKSWTEED FDMRWWKMIG RFELQEYEWI RLLYDHRKKW  420
VPTYMKGTFL GGMCPIQRSE SMSAFLDRYI HKKITLKEFV RQYGTILHNI FEDEALADFD  480
TWHKQPALKS PSPWEKQVSA LYTHAIFKKF QVEVLGVVGC HIEKVGDDGT TVTFKVQDCE  540
KNERFYVAWI EAKSEVYCSC RSFEYRGFLC RHAMIVLQIC GFSSIPSQYI LTRWTKDAKS  600
MQSSSIGAIR VEDRIQRYNY LCKRAIELCE EGSLSQDNYS VAIRFLVEAL KNCVNENDSN  660
KNVGESNNAS ILKEHHGSLA FKRNKKRIPN KKRRALSETE FSADTSSNLH QMVPLNLMEP  720
PHDAYYINQQ SLQGLLTNIA SGHDIFFGPQ QSTRSINNLD FRVQANFTYG VQENTGSSPS  780
HVHGSSSGRA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010648203.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2P6S0S3	0.0	A0A2P6S0S3_ROSCH; Putative transcription factor FAR family
STRING	VIT_03s0017g01810.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0079s0014.3.p

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]