PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0080s0073.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26350.9 Da    PI: 9.7569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0080s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-1973125456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++++++eq+  Le  F +++++  e++e+LA+klgL++rqV +WFqNrRa++k
  Kalax.0080s0073.1.p  73 KRKLSEEQVSLLEVNFGNEHKLEWERKERLAAKLGLDQRQVAIWFQNRRARWK 125
                          45899***********************************************9 PP
2HD-ZIP_I/II110.89.2e-3672161291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+ls+eqv+lLE +F +e+kLe erK++la +Lgl++rqva+WFqnrRAR+ktk+lE+dy++Lk+a+d+l+ +n +Le++v +L e+l
  Kalax.0080s0073.1.p  72 RKRKLSEEQVSLLEVNFGNEHKLEWERKERLAAKLGLDQRQVAIWFQNRRARWKTKKLEEDYSRLKAAHDSLVLHNFQLESQVIKLVERL 161
                          8*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.24467127IPR001356Homeobox domain
SMARTSM003894.9E-1670131IPR001356Homeobox domain
CDDcd000861.40E-1572128No hitNo description
SuperFamilySSF466898.13E-1773136IPR009057Homeodomain-like
PfamPF000461.1E-1573125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-1874134IPR009057Homeodomain-like
PRINTSPR000312.4E-698107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000312.4E-6107123IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MISVINNNKS EAGDDQMLSI SQMYPAAGVV YAQLETEIKQ EAAGDKKMRK RRRKKSKACR  60
GGESIREAGA LRKRKLSEEQ VSLLEVNFGN EHKLEWERKE RLAAKLGLDQ RQVAIWFQNR  120
RARWKTKKLE EDYSRLKAAH DSLVLHNFQL ESQVIKLVER LGRTENQAKR LSERSSEGTS  180
SNNPTSCLSL DALFLGGFGI IQDGLHNNVF YMDQENYVPG AMEWPNLHDM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14553KKMRKRRRK
24852RKRRR
34854RKRRRKK
45274RKKSKACRGGESIREAGALRKRK
57075LRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A314UKD23e-55A0A314UKD2_PRUYE; Homeobox-leucine zipper protein ATHB-40
STRINGEMJ059302e-55(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-48homeobox protein 40