PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0081s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 207aa    MW: 23211.1 Da    PI: 5.0287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0081s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-161565256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ykGVr +  +g+WvAeIr p++   r r++lg++++  +Aa+a +aa  +l+g+
  Kalax.0081s0011.1.p 15 LYKGVRKRN-WGKWVAEIRLPNS---RDRIWLGSYDSQVKAARAFDAAIYCLRGA 65
                         59****887.**********933...5**********99*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.48E-261474No hitNo description
SMARTSM003801.2E-281578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-271574IPR001471AP2/ERF domain
PROSITE profilePS5103220.7321572IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-191574IPR016177DNA-binding domain
PRINTSPR003677.1E-81627IPR001471AP2/ERF domain
PfamPF008471.9E-91664IPR001471AP2/ERF domain
PRINTSPR003677.1E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAGGGGADSD SSSKLYKGVR KRNWGKWVAE IRLPNSRDRI WLGSYDSQVK AARAFDAAIY  60
CLRGAGAKFN FPHSPPDFRI TRPLTNTEIQ EIAASYANQE PRRSSGVEDV QQSTSSHFEE  120
LNFDHNDSSN SSSSMWGGNE GQIDWPLWNC LLDNVTDYRY PSPEYSSFLP YQSDQYNSFG  180
HSGYESGSDE GYSQHNNLSL WNFQGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14573473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324785.11e-45ethylene-responsive transcription factor ERF017
SwissprotQ84QC23e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLB9IKF63e-44B9IKF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08320.15e-45(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]