PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0081s0102.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 960aa MW: 105608 Da PI: 7.9919

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0081s0102.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.3e-06	71	126	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ + ++++F+ + ++s++e +e++++ g+t +qV+ +F +R + + Kalax.0081s0102.2.p 71 KKPRDLLNPKAVAYMQSVFAIKDKISKKETREISAQFGITLSQVRDYFASQRSRVR 126 79999***********************************************9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.22	68	128	IPR001356	Homeobox domain
SMART	SM00389	8.5E-4	70	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-7	71	136	IPR009057	Homeodomain-like
CDD	cd00086	6.48E-5	71	126	No hit	No description
SuperFamily	SSF46689	2.1E-6	71	130	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MDGLSARLAA EEEGIGTSME SFQKCLESQK DLFHSQLIEM KRIVSAQCKL TGINPLSQEM 60 AAGALSIAIG KKPRDLLNPK AVAYMQSVFA IKDKISKKET REISAQFGIT LSQVRDYFAS 120 QRSRVREIVQ SSQEISRDKS KVLKDLQNGN HENKGSIMRS DPGPFIDAGP VTCDTNIATA 180 VKPEINETAA SSDSRPTETD VGTARCDSPE FSLATCIPVT DEDDVTDEPS RSEIATHKST 240 VSTYAEPVPL NVVPPTISET PASNSSGICD ARMQPKLTKG EVLPELDGSD KNFVENIFNL 300 MSKEETFSGQ VNLMEGILKI ESSSVLDWFL SKGGVMILAT WLRQAAVEEQ TSVLHVILKV 360 LCHLPLAKAL PEKMSVILQS VNSLRFYRSQ DISNKARICL ARWSKLFAKS QPMMKLNGVK 420 SQIEVAKLKL LTQSINEING DESRQLELEN TDGNLTSSNQ ANGNLRKRER PLQMEMPTAS 480 PEDSVKRISM GLSSSQGKGR RKVQLVEHIG QRATGTSQQA VRASVSQSRP MSTDDIQKAK 540 LRKEVMEAKY GKKKSEPGSH KPGVSSLIVQ ASRVPTQPVP HERRNSKLPL PKNLTEHKPP 600 VTPHPYQTDE KKQNLLPLEN KDELKQPMVP LQNSTVGLEQ PTASFANNTD EQPMMQAVKS 660 IVEQMQTVVP LLNSNMKSQV LPENIAEQIQ ATVSISRSTA EPQVNSNGSA EKRQPIISIS 720 NSIVQKVPRP KKTIPETKEP FWKQCKRVQI PWKTPPEMVI DTEWRVGSGQ NSRELRDQKV 780 RNKREKEFVY QRHEEIPPNP KNPWENEIDY DDTLTPIIPM EQVIDTSDPL QSQNSISVET 840 GNTSQMGSVA HTPAPSSLPG TVSGSEHDPV LLNALLKNPA LVFKLTSGQT ANMTSEDTVR 900 LLDMIKATAG AFPIGNVTHN LSSGCRVSEE RVEGSLPSPT PSSNFGTVRD SGLCCITCK*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MDGLSARLAA EEEGIGTSME SFQKCLESQK DLFHSQLIEM KRIVSAQCKL TGINPLSQEM  60
AAGALSIAIG KKPRDLLNPK AVAYMQSVFA IKDKISKKET REISAQFGIT LSQVRDYFAS  120
QRSRVREIVQ SSQEISRDKS KVLKDLQNGN HENKGSIMRS DPGPFIDAGP VTCDTNIATA  180
VKPEINETAA SSDSRPTETD VGTARCDSPE FSLATCIPVT DEDDVTDEPS RSEIATHKST  240
VSTYAEPVPL NVVPPTISET PASNSSGICD ARMQPKLTKG EVLPELDGSD KNFVENIFNL  300
MSKEETFSGQ VNLMEGILKI ESSSVLDWFL SKGGVMILAT WLRQAAVEEQ TSVLHVILKV  360
LCHLPLAKAL PEKMSVILQS VNSLRFYRSQ DISNKARICL ARWSKLFAKS QPMMKLNGVK  420
SQIEVAKLKL LTQSINEING DESRQLELEN TDGNLTSSNQ ANGNLRKRER PLQMEMPTAS  480
PEDSVKRISM GLSSSQGKGR RKVQLVEHIG QRATGTSQQA VRASVSQSRP MSTDDIQKAK  540
LRKEVMEAKY GKKKSEPGSH KPGVSSLIVQ ASRVPTQPVP HERRNSKLPL PKNLTEHKPP  600
VTPHPYQTDE KKQNLLPLEN KDELKQPMVP LQNSTVGLEQ PTASFANNTD EQPMMQAVKS  660
IVEQMQTVVP LLNSNMKSQV LPENIAEQIQ ATVSISRSTA EPQVNSNGSA EKRQPIISIS  720
NSIVQKVPRP KKTIPETKEP FWKQCKRVQI PWKTPPEMVI DTEWRVGSGQ NSRELRDQKV  780
RNKREKEFVY QRHEEIPPNP KNPWENEIDY DDTLTPIIPM EQVIDTSDPL QSQNSISVET  840
GNTSQMGSVA HTPAPSSLPG TVSGSEHDPV LLNALLKNPA LVFKLTSGQT ANMTSEDTVR  900
LLDMIKATAG AFPIGNVTHN LSSGCRVSEE RVEGSLPSPT PSSNFGTVRD SGLCCITCK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-116	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0081s0102.2.p