PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0082s0061.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 949aa MW: 104725 Da PI: 4.5013

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0082s0061.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	8.9e-10	799	841	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + el++++++q+G++ +++I + ++ gRt+ q+k+++ k Kalax.0082s0061.1.p 799 ASWSKLDTELFYQGIRQFGTD-FTLIQQLFP-GRTRHQIKLKYKK 841 58*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	5.5E-28	791	875	No hit	No description
SuperFamily	SSF46689	6.8E-10	792	842	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.322	796	844	IPR017884	SANT domain
SMART	SM00717	6.6E-9	797	845	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-6	798	841	IPR009057	Homeodomain-like
CDD	cd00167	4.17E-7	800	841	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MDFDDLDPFD DFLEVRTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS 60 LPQESSSDAT HMGVASAAKS VGQSDSLNNV EDQHSGISLV QPVPVSPEPL SPLPRHDDGC 120 SKDAFHEELA ETRVDGSQTS LVEECPSKGL GQVAKDYISS MDSEFDSFDD FLAAPTDSNG 180 AATKFKPKAK GRPKPRSSVV PSTSPHVSIE NALISTAAAV ETVQENAAEV AYLSPPRASN 240 SICVSDHLNK VNKPQIISQD VVTGGTGGLN CDYYEKPPVS GGDGCQNFGV KQCPSRAESA 300 SLKCNQFDDI DPEQSISTAR DGGEFRPKLK SRPVKQTLSS AKSGLTGTMN ENHVEISSDA 360 FDSNRQENLG GTDVSGNNNI PEGSLQDRVP LDDSRRFEME NSSSINVVLD DLQFDVTTIE 420 SFHPQSRSSP DKSLNSSRDV FMGDRIIESY QFDNGEIPCS IIMVDQGNPH SFVDQESNTC 480 DSSQAQSMFG VTGNQNEMSI RDSTTSMITK PSDIDSGRME PEHRESFDNG SLDDPSISGF 540 PLADDYFSMN EPFTCGSEIG QSGASLPDNG MHVEATHEIP VERVDDSAAP EGTGTRQPSR 600 VLRKRKARST RPAESVDCET DSIHGELHSE FDRNQDEDYN EGNTKQKKKG VQRSRKSVPE 660 SDQPNRSRKK VKDASSEQQE KPKKKFSHST RGRRKRVDPT LLATPDDEID HRSCSFRDLI 720 LRAEFLERDS KKVSTPSSAP ATNQRTESPS PWDQPYNERS NFDSDQHGEY DDYEDDNIEV 780 QESSSYFNYH SYMTKTPRAS WSKLDTELFY QGIRQFGTDF TLIQQLFPGR TRHQIKLKYK 840 KEERQHPQRV SEAIENRAKG ISYFQQVIEQ LKATDTQADQ ELGEDPNEVE DYADDVLEEN 900 AEPNENGSTR LELGDVVAKD DVEALDTAEV SEKMDEDDDY GLGSYVGL*

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MDFDDLDPFD DFLEVRTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS  60
LPQESSSDAT HMGVASAAKS VGQSDSLNNV EDQHSGISLV QPVPVSPEPL SPLPRHDDGC  120
SKDAFHEELA ETRVDGSQTS LVEECPSKGL GQVAKDYISS MDSEFDSFDD FLAAPTDSNG  180
AATKFKPKAK GRPKPRSSVV PSTSPHVSIE NALISTAAAV ETVQENAAEV AYLSPPRASN  240
SICVSDHLNK VNKPQIISQD VVTGGTGGLN CDYYEKPPVS GGDGCQNFGV KQCPSRAESA  300
SLKCNQFDDI DPEQSISTAR DGGEFRPKLK SRPVKQTLSS AKSGLTGTMN ENHVEISSDA  360
FDSNRQENLG GTDVSGNNNI PEGSLQDRVP LDDSRRFEME NSSSINVVLD DLQFDVTTIE  420
SFHPQSRSSP DKSLNSSRDV FMGDRIIESY QFDNGEIPCS IIMVDQGNPH SFVDQESNTC  480
DSSQAQSMFG VTGNQNEMSI RDSTTSMITK PSDIDSGRME PEHRESFDNG SLDDPSISGF  540
PLADDYFSMN EPFTCGSEIG QSGASLPDNG MHVEATHEIP VERVDDSAAP EGTGTRQPSR  600
VLRKRKARST RPAESVDCET DSIHGELHSE FDRNQDEDYN EGNTKQKKKG VQRSRKSVPE  660
SDQPNRSRKK VKDASSEQQE KPKKKFSHST RGRRKRVDPT LLATPDDEID HRSCSFRDLI  720
LRAEFLERDS KKVSTPSSAP ATNQRTESPS PWDQPYNERS NFDSDQHGEY DDYEDDNIEV  780
QESSSYFNYH SYMTKTPRAS WSKLDTELFY QGIRQFGTDF TLIQQLFPGR TRHQIKLKYK  840
KEERQHPQRV SEAIENRAKG ISYFQQVIEQ LKATDTQADQ ELGEDPNEVE DYADDVLEEN  900
AEPNENGSTR LELGDVVAKD DVEALDTAEV SEKMDEDDDY GLGSYVGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-38	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0082s0061.1.p