PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0083s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 457aa    MW: 50482.3 Da    PI: 8.2044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0083s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.6e-114469126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +f+rtG C yG +C+++H+
  Kalax.0083s0026.1.p 44 PGEPNCIYFLRTGSCGYGTNCRYNHP 69
                         5789*********************9 PP
2zf-CCCH40.73.9e-1389114227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C ff++tGtCkyG++Ck++H++
  Kalax.0083s0026.1.p  89 GEPDCGFFMKTGTCKYGSSCKYNHPR 114
                          6899********************96 PP
3zf-CCCH36.86.7e-12137159527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C +++rtG+Ck+G+ CkF+H++
  Kalax.0083s0026.1.p 137 PCTYYMRTGQCKFGPACKFHHPE 159
                          8********************96 PP
4zf-CCCH37.34.6e-12291316227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ +GtCkyG+ Ck++H++
  Kalax.0083s0026.1.p 291 DQPECRYFMNSGTCKYGPDCKYNHPR 316
                          689*********************96 PP
5zf-CCCH30.65.8e-10336360125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          ++++lC+ ++ +G+C+ G++CkF+H
  Kalax.0083s0026.1.p 336 PGQPLCSSYSTYGICSNGPTCKFHH 360
                          589********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6854371IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-44969IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83187115IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-1089114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-493114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6132160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197132160IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5137158IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9137159IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.615289317IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6292319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6295317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6334361IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868335363IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7337360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4340362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MQDNNSNNAV AVHNESLREP SIRPKMHNNY KHQEGAVTDY PDRPGEPNCI YFLRTGSCGY  60
GTNCRYNHPT HVAQDVVYGL GGELPERDGE PDCGFFMKTG TCKYGSSCKY NHPRDRNDGN  120
PVSFNILGLP MRSEGNPCTY YMRTGQCKFG PACKFHHPEP AFPGLVFPVF GTTHLGSTES  180
SNLHIRTFPA LPIPAAAYVY DPQTQTQQPY MPLTVSPSQG FLPQQGWSTY QVSLFVQSST  240
NQRNMSPVSS TNTRGSSPSY NSSSRCLGAS GSNGQVHYLS FFTPPYPERP DQPECRYFMN  300
SGTCKYGPDC KYNHPRERIA QMLPQPVNPL GLPFRPGQPL CSSYSTYGIC SNGPTCKFHH  360
QVSGYPLNCG LSPFPLPLPM PVFDEPIFGR RSSTVVISSE TSSPSKSPKD LDWMRKPESA  420
TERSRHLGTN GLQKSHDEEA GTMRNSSPAS STKKHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275775.11e-145PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLD7TEE81e-143D7TEE8_VITVI; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-98C3H family protein