PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0083s0026.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 445aa    MW: 49298.4 Da    PI: 8.2609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0083s0026.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.4e-114368126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +f+rtG C yG +C+++H+
  Kalax.0083s0026.3.p 43 PGEPNCIYFLRTGSCGYGTNCRYNHP 68
                         5789*********************9 PP
2zf-CCCH40.83.8e-1388113227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C ff++tGtCkyG++Ck++H++
  Kalax.0083s0026.3.p  88 GEPDCGFFMKTGTCKYGSSCKYNHPR 113
                          6899********************96 PP
3zf-CCCH36.86.5e-12136158527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C +++rtG+Ck+G+ CkF+H++
  Kalax.0083s0026.3.p 136 PCTYYMRTGQCKFGPACKFHHPE 158
                          8********************96 PP
4zf-CCCH37.34.5e-12279304227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ +GtCkyG+ Ck++H++
  Kalax.0083s0026.3.p 279 DQPECRYFMNSGTCKYGPDCKYNHPR 304
                          689*********************96 PP
5zf-CCCH30.65.6e-10324348125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          ++++lC+ ++ +G+C+ G++CkF+H
  Kalax.0083s0026.3.p 324 PGQPLCSSYSTYGICSNGPTCKFHH 348
                          589********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6854270IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-54269IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-84468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-54770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-44868IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-786113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83186114IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-1088113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-492113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6131159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197131159IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7132158IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9136158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5136157IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.615277305IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6280307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6283305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868323351IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4323350IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7325348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4328350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MCLVNRFPLL MDGWILVEPS IRPKMHNNYK HQEGAVTDYP DRPGEPNCIY FLRTGSCGYG  60
TNCRYNHPTH VAQDVVYGLG GELPERDGEP DCGFFMKTGT CKYGSSCKYN HPRDRNDGNP  120
VSFNILGLPM RSEGNPCTYY MRTGQCKFGP ACKFHHPEPA FPGLVFPVFG TTHLGSTESS  180
NLHIRTFPAL PIPAAAYVYD PQTQTQQPYM PLTVSPSQGF LPQQGWSTYQ RNMSPVSSTN  240
TRGSSPSYNS SSRCLGASGS NGQVHYLSFF TPPYPERPDQ PECRYFMNSG TCKYGPDCKY  300
NHPRERIAQM LPQPVNPLGL PFRPGQPLCS SYSTYGICSN GPTCKFHHQV SGYPLNCGLS  360
PFPLPLPMPV FDEPIFGRRS STVVISSETS SPSKSPKDLD WMRKPESATE RSRHLGTNGL  420
QKSHDEEAGT MRNSSPASST KKHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275775.11e-145PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLD7TEE81e-144D7TEE8_VITVI; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.29e-99C3H family protein