PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0084s0057.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 423aa MW: 46445.2 Da PI: 8.4023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0084s0057.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kalax.0084s0057.1.p 85 FVCEICSKGFQRDQNLQLHRRGH 107 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.31E-5	84	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.9E-5	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	85	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.31E-5	157	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MFSSKLPNFS EEAAAPASVS SSDKINIAHH HVFGTLNPSS SSQIPSTNLD QPVKTKKKRN 60 LPGNPDPDAE VIALSPKTLL ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRSSND 120 VVRKRAYVCP EPTCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCCKI YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRK DSFVTHRAFC DALAEESARL CATNANELMF SLDHHHASTA 240 TSDFNPTAAT QTAASIFSHQ QSSPNSLITH PPSFLHPHIH LIHIKPELNR HHLPFFHYSP 300 SSVASAANLS ATALLQKAAT VGAMAASSPL GLTMMGHHTF DVGMTSTWQR TDRLTRDFLG 360 LTADDDDDDR QEVAQTSRGG KELLTYSSPE GGVGLGFPGM IDGDPPGDGF GLAQAHRHHD 420 AW*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MFSSKLPNFS EEAAAPASVS SSDKINIAHH HVFGTLNPSS SSQIPSTNLD QPVKTKKKRN  60
LPGNPDPDAE VIALSPKTLL ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRSSND  120
VVRKRAYVCP EPTCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCCKI YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRK DSFVTHRAFC DALAEESARL CATNANELMF SLDHHHASTA  240
TSDFNPTAAT QTAASIFSHQ QSSPNSLITH PPSFLHPHIH LIHIKPELNR HHLPFFHYSP  300
SSVASAANLS ATALLQKAAT VGAMAASSPL GLTMMGHHTF DVGMTSTWQR TDRLTRDFLG  360
LTADDDDDDR QEVAQTSRGG KELLTYSSPE GGVGLGFPGM IDGDPPGDGF GLAQAHRHHD  420
AW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	158	220	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-34	158	220	3	65	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164997.1	1e-141	protein indeterminate-domain 12
Swissprot	O22759	1e-120	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2P6PVQ8	1e-139	A0A2P6PVQ8_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004290634.1	1e-136	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0084s0057.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]