PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0085s0032.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 353aa    MW: 38953.6 Da    PI: 6.3503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0085s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161566148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                         rg W++eEd +   +v ++G+g+W++++++      ++R++k+c++rw++yl
  Kalax.0085s0032.1.p 15 RGVWSPEEDAKMMAYVSKYGTGNWTAVPKKAAsgagLRRCGKSCRLRWNNYL 66
                         899************************************************7 PP
2Myb_DNA-binding45.81.4e-1473115246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++T++E+el+++++   G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0085s0032.1.p  73 DNFTPQEEELIIKLHGAIGTR-WSIIAQQLP-GRTDNDVKNYWNS 115
                          68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-25670IPR009057Homeodomain-like
PROSITE profilePS5129417.291066IPR017930Myb domain
SuperFamilySSF466896.74E-3012113IPR009057Homeodomain-like
SMARTSM007171.4E-121468IPR001005SANT/Myb domain
PfamPF002491.0E-141566IPR001005SANT/Myb domain
CDDcd001679.06E-101866No hitNo description
PROSITE profilePS5129423.52967121IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2371121IPR009057Homeodomain-like
SMARTSM007172.3E-1371119IPR001005SANT/Myb domain
CDDcd001678.21E-1074117No hitNo description
PfamPF002495.4E-1374115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMAQSTCCEK MSVKRGVWSP EEDAKMMAYV SKYGTGNWTA VPKKAASGAG LRRCGKSCRL  60
RWNNYLRPDL KHDNFTPQEE ELIIKLHGAI GTRWSIIAQQ LPGRTDNDVK NYWNSKLRKK  120
LQDMGIDPVT HKPYSQILAD YGSIGGLRKF GHSLNKDLKN AFTQIEGNPE EQFVHFSCRD  180
GQVRGAQSHQ NVHESTDLLD QLQAIKKFTE AAPSSKNIET AVTASPQWGY GHPTLSPTSS  240
SSSSACSAGN TSSSLQGLNW QDYLLDDVFV PSEDNMAEYF MSGNTDGSRK IEGPEPAQAL  300
SQSKNIVMDH HGSGATVIRA SDASFLDDML AKENEMMLLE FPSLLEDSTF ES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28151217108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028119397.11e-103transcription factor MYB35-like
TrEMBLA5C7N11e-101A5C7N1_VITVI; Uncharacterized protein
STRINGcassava4.1_031039m1e-101(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-65MYB family protein