PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0085s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 171aa    MW: 18885.7 Da    PI: 10.1495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0085s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-1856107155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++ +g
  Kalax.0085s0037.1.p  56 SSYIGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALARRG 107
                          6799******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-2156115IPR016177DNA-binding domain
CDDcd000187.87E-2756114No hitNo description
PfamPF008472.0E-1256107IPR001471AP2/ERF domain
PROSITE profilePS5103220.92957115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2757115IPR001471AP2/ERF domain
SMARTSM003801.7E-3057121IPR001471AP2/ERF domain
PRINTSPR003671.1E-95869IPR001471AP2/ERF domain
PRINTSPR003671.1E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSCTGPTQFI TPSLHISITQ QQHCSFQFPA TGITSQPSPE NFINLNEAVR LGKEQSSYIG  60
VRKRPWGKFA AEIRDSTRNG VRVWLGTFDT AESAALAYDQ AALARRGPMA LLNFWEELVR  120
GSLRELKCTV EENGSPVLAL KKKHSKKLIN KVFVARTKGA IDLHSINQCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2651122879Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181066.11e-44PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8VYM06e-41ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A2J6L5792e-40A0A2J6L579_LACSA; Uncharacterized protein
TrEMBLQ8GZE94e-40Q8GZE9_SOLLC; Ethylene responsive element binding protein
STRINGSolyc09g089930.1.12e-40(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-27ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]