PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0087s0029.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 506aa MW: 55548.9 Da PI: 6.3852

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0087s0029.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	394	414	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cgk F ++ ++++H+++ H Kalax.0087s0029.2.p 394 CEKCGKAF-QQAEMEKHMKVfH 414 ******.********988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03152	2.8E-42	25	195	IPR004854	Ubiquitin fusion degradation protein UFD1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MQESLIAGKG IVFHRFLTPV LYEGSGDKIK LPLSCFKELS DEGAFDKGPL YFRLSVVQRN 60 SPSDPNPNGE DTQRSTHSGV LEFTADEDCV ALPRHVWNNL FPTAAIAAPL VEVRYVWLPK 120 GVYAKLQPDR IGFSDIPNHK AVLETILRHH ATLSENDLLT VNHGILTYTL RVLELKPSSS 180 VSVLDTDIEV DVVSPDKTSN SADQPYLQPL ELGKSESGAL DEGNYVYYKF SINGDVWSII 240 ESGDANVCVK METGENDGDT DLYVSRHPLL FPTTHQHQWS SHDVGSKTLT MTAKDENLGA 300 GSYTVGVYGF KGTSKYKLTV TVEAAASQKV GLKATSTSQA VEADTVECRN CKHLIPSRSI 360 TLHEAYCSRN NVTCKRPGCG VVLRVGEAKN HVHCEKCGKA FQQAEMEKHM KVFHEPLQCP 420 CGVLLEKEDM VQHQAVDCPL RLITCRFCGD MVQAGNSAID VRDRMRGLSE HESGCGSRTA 480 PCSTCGRSVM LKDMDIHQVA VHPNN*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MQESLIAGKG IVFHRFLTPV LYEGSGDKIK LPLSCFKELS DEGAFDKGPL YFRLSVVQRN  60
SPSDPNPNGE DTQRSTHSGV LEFTADEDCV ALPRHVWNNL FPTAAIAAPL VEVRYVWLPK  120
GVYAKLQPDR IGFSDIPNHK AVLETILRHH ATLSENDLLT VNHGILTYTL RVLELKPSSS  180
VSVLDTDIEV DVVSPDKTSN SADQPYLQPL ELGKSESGAL DEGNYVYYKF SINGDVWSII  240
ESGDANVCVK METGENDGDT DLYVSRHPLL FPTTHQHQWS SHDVGSKTLT MTAKDENLGA  300
GSYTVGVYGF KGTSKYKLTV TVEAAASQKV GLKATSTSQA VEADTVECRN CKHLIPSRSI  360
TLHEAYCSRN NVTCKRPGCG VVLRVGEAKN HVHCEKCGKA FQQAEMEKHM KVFHEPLQCP  420
CGVLLEKEDM VQHQAVDCPL RLITCRFCGD MVQAGNSAID VRDRMRGLSE HESGCGSRTA  480
PCSTCGRSVM LKDMDIHQVA VHPNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2yuj_A	1e-21	26	191	40	187	Ubiquitin fusion degradation 1-like
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273297.1	0.0	PREDICTED: uncharacterized protein LOC100246609
TrEMBL	F6HID7	0.0	F6HID7_VITVI; Uncharacterized protein
STRING	VIT_12s0059g01100.t01	0.0	(Vitis vinifera)

Link Out ? help Back to Top
Phytozome	Kalax.0087s0029.2.p