PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0088s0014.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 416aa MW: 46236.4 Da PI: 5.0524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0088s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	246	288	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N++++ Lr+++Pk + K++ +iL ++eY+k+L Kalax.0088s0014.1.p 246 LAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIEYMKEL 288 58*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.294	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	243	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-14	246	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-9	246	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.61E-5	253	293	No hit	No description
CDD	cd04873	9.11E-4	341	404	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEISEEDFLQ ELLALRRSSQ TSSWVSTTST PTFSTHMTHN NNVVPNANNF ITTTNNTVWS 60 NSNSNSNSSF QITASSSSPW DPPRDPQTFS TNHPPPFNQA FHNPTPRFPS SQHHPQLCSS 120 AEHHPHMMEE DETASLFLVQ HDGGGLYYNP FSGFEDHHYH QADLASSLLV EDQSAMMMMM 180 MMQSDTQSLK IEPSAAAATP SSDLLAVPSQ VFNVGCGGSD FSERKSGGGG GKASKKVQGQ 240 PSKNLLAERR RRKRLNDRLS LLRSIVPKIS KMDRTSILGD TIEYMKELLE RIQSLQDELD 300 LDHHSDDQVF LVDLFQDLKP NEVQIRNTPK FEVERRNPKD TRVEICCSGK PGLLLSTVNT 360 MEALGLEIEQ CVISCFNDFA MHASCSEDVD TGNETDCEEI KQALFRNAGY GGQCL*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEISEEDFLQ ELLALRRSSQ TSSWVSTTST PTFSTHMTHN NNVVPNANNF ITTTNNTVWS  60
NSNSNSNSSF QITASSSSPW DPPRDPQTFS TNHPPPFNQA FHNPTPRFPS SQHHPQLCSS  120
AEHHPHMMEE DETASLFLVQ HDGGGLYYNP FSGFEDHHYH QADLASSLLV EDQSAMMMMM  180
MMQSDTQSLK IEPSAAAATP SSDLLAVPSQ VFNVGCGGSD FSERKSGGGG GKASKKVQGQ  240
PSKNLLAERR RRKRLNDRLS LLRSIVPKIS KMDRTSILGD TIEYMKELLE RIQSLQDELD  300
LDHHSDDQVF LVDLFQDLKP NEVQIRNTPK FEVERRNPKD TRVEICCSGK PGLLLSTVNT  360
MEALGLEIEQ CVISCFNDFA MHASCSEDVD TGNETDCEEI KQALFRNAGY GGQCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	254	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LSL1	6e-75	BH093_ARATH; Transcription factor bHLH93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-64	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Kalax.0088s0014.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]