PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0088s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 208aa    MW: 23190.1 Da    PI: 6.4199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0088s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-162068355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr ++ +g+Wv+eIr p++   r r++lg+f  ae+Aa+a++ a ++++g
  Kalax.0088s0053.1.p 20 YRGVRMRS-WGKWVSEIRQPRK---RSRVWLGTFPNAEMAARAHDVASLAFKG 68
                         9****998.**********954...5*******************99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-111867IPR001471AP2/ERF domain
PROSITE profilePS5103222.8271976IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-201977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-311977IPR001471AP2/ERF domain
SMARTSM003804.1E-361982IPR001471AP2/ERF domain
CDDcd000184.49E-302078No hitNo description
PRINTSPR003673.9E-102031IPR001471AP2/ERF domain
PRINTSPR003673.9E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAEYVSNIRA KEERRGAPAY RGVRMRSWGK WVSEIRQPRK RSRVWLGTFP NAEMAARAHD  60
VASLAFKGKS AHLNFPHLVP HLPQPASLLP SHIRAAASKA AAMTHLTSCP PKQVKPADDH  120
SPAEAVMSWS GDQEAQQGSY WNEMGSELVE LPSLAESEAL QSCVWDELRI MDSGGWWVWE  180
DMHDIDRFGY LNEVIGSVVV DEDHTGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1620771573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9M0806e-41ERF43_ARATH; Ethylene-responsive transcription factor ERF043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]