PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0089s0042.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 252aa    MW: 28228.7 Da    PI: 8.5713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0089s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063102124123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C k+F ++  L  H++ H
  Kalax.0089s0042.1.p 102 FECQFCWKRFENSQALGGHQNAH 124
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-593128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-698129No hitNo description
PROSITE profilePS5015711.219102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVLITKLNHS LSPSTTKLCA LARVLISSCR EMAKDDGASG TYVADSKRLK LFGFELRAER  60
LDEGSPGASD ESVNSSSISS EKEGFEKKTT MKMQLEVEKK KFECQFCWKR FENSQALGGH  120
QNAHKKERMR RKRLQLQARR SSLAPYLQPN SQNIHYYNDE HSSADPWIYE SKFSIYNESS  180
SIVSFGSSLD QRIQYPYEIH EWYDDNLVHS SGGFTLTAGY DFSSGEGKGA AAKPKPGFKQ  240
AVDLQLGLSL L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-13zinc finger protein 5