PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0089s0069.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 625aa MW: 71846.4 Da PI: 8.4003

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0089s0069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.4	7.5e-11	60	102	3	45
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 Yn+Y + GF rk+ s+ks+r+gei+++++vC+keg+++ + Kalax.0089s0069.1.p 60 YNQYTARKGFGFRKNDSTKSRRTGEIIRKEYVCNKEGFKNIDI 102 **************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-8	60	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-11	250	295	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	393	427	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-6	402	429	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.2E-5	402	420	IPR007527	Zinc finger, SWIM-type
Gene3D	G3DSA:4.10.60.10	7.9E-4	557	578	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MNPEYFIEDE SISSHNILED SARQMVLVHK DAAQDAYCEE NSDSLLGKSF DTVDEAYAAY 60 NQYTARKGFG FRKNDSTKSR RTGEIIRKEY VCNKEGFKNI DISIMDPKKR RRDWIMDKFS 120 DEHNHPLTSP NKVMKHRSHS KYHKSAEGKK LIYELHAAGL TPSQITKAVN TLTGDLHEDI 180 TARKCTEVLR TQKQNNVGKE CVAIIKHFQE KAGKGDDFYF NVQIDNDGCL RNVFWADKRS 240 RTSYLEFGDV MIFDVTYRTN KFKMPFSPFV GVNHHRQSLL FGGALLDDET ENTFKIRDWG 300 KGWLPTMYRD REYWVKCYLK NTLFAGMTTT GRSESIHSFF DGFVNSTTTL NEFVEQYDKE 360 VAARRKSEED EDFQTSNSQP VLITEHGIEK DARKSDIEQQ TTKCSCAKFE IDGILCKHVL 420 YILKKKKFKN LSVTYLLHRW TVGAREVREV VDVVSAEEKW VARTMYNQII RDAEFSPSIF 480 RDFIRVAKTF MTQLQKEREA TEKVLTDDNL TQAESVFKIS QVELQPSQLS ILDPVCDRKV 540 KGRPKSASRI PSAIEKIKKY KCSGCKKNGH NKATCPEKKC KLLDNLLLLS VIDDQYLLFF 600 KDDSQTSDQA PSARPTGGFP DAPH*

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MNPEYFIEDE SISSHNILED SARQMVLVHK DAAQDAYCEE NSDSLLGKSF DTVDEAYAAY  60
NQYTARKGFG FRKNDSTKSR RTGEIIRKEY VCNKEGFKNI DISIMDPKKR RRDWIMDKFS  120
DEHNHPLTSP NKVMKHRSHS KYHKSAEGKK LIYELHAAGL TPSQITKAVN TLTGDLHEDI  180
TARKCTEVLR TQKQNNVGKE CVAIIKHFQE KAGKGDDFYF NVQIDNDGCL RNVFWADKRS  240
RTSYLEFGDV MIFDVTYRTN KFKMPFSPFV GVNHHRQSLL FGGALLDDET ENTFKIRDWG  300
KGWLPTMYRD REYWVKCYLK NTLFAGMTTT GRSESIHSFF DGFVNSTTTL NEFVEQYDKE  360
VAARRKSEED EDFQTSNSQP VLITEHGIEK DARKSDIEQQ TTKCSCAKFE IDGILCKHVL  420
YILKKKKFKN LSVTYLLHRW TVGAREVREV VDVVSAEEKW VARTMYNQII RDAEFSPSIF  480
RDFIRVAKTF MTQLQKEREA TEKVLTDDNL TQAESVFKIS QVELQPSQLS ILDPVCDRKV  540
KGRPKSASRI PSAIEKIKKY KCSGCKKNGH NKATCPEKKC KLLDNLLLLS VIDDQYLLFF  600
KDDSQTSDQA PSARPTGGFP DAPH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023759759.1	1e-154	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2U1MT61	1e-93	A0A2U1MT61_ARTAN; Protein FAR1-RELATED SEQUENCE 5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-43	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0089s0069.1.p