PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0090s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 331aa MW: 37080.5 Da PI: 8.2781

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0090s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.1	1.1e-46	18	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee...............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lppGfrF Ptd el+++yL +k+++++ ++ + + evd++++ePw++p ++ + ke+yf+s+rd+kyatg r+n Kalax.0090s0019.1.p 18 LPPGFRFYPTDGELICDYLMNKISETSSRCRDsnntdsssppplhvpQLIEVDLNTSEPWEIPGMACVGGKECYFYSQRDRKYATGMRTN 107 79**********************9666556677889999998866999********7666789**************** PP NAM 76 ratksgyWkatgkdkevlskkgel.....vglkktLvfykgrapkgektdWvmheyrl 128 ratk+gyWkatgkdk+v++++++ vg++ktLvfy+grap+g+kt+Wvmhe+rl Kalax.0090s0019.1.p 108 RATKTGYWKATGKDKAVYCSSSRSpspslVGMRKTLVFYRGRAPRGRKTEWVMHEFRL 165 ***************8444455666*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-49	11	183	IPR003441	NAC domain
PROSITE profile	PS51005	45.163	18	190	IPR003441	NAC domain
Pfam	PF02365	7.8E-25	19	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MRKQSRSSSS IEVVEEKLPP GFRFYPTDGE LICDYLMNKI SETSSRCRDS NNTDSSSPPP 60 LHVPQLIEVD LNTSEPWEIP GMACVGGKEC YFYSQRDRKY ATGMRTNRAT KTGYWKATGK 120 DKAVYCSSSR SPSPSLVGMR KTLVFYRGRA PRGRKTEWVM HEFRLLKPPS LLSSSIKEPE 180 DWVFHKHISG SRCITQPASS PLPQLTHDPY LALPQPQTDS NLIIAMNQDR HHSNGDHQQV 240 PCFSILSSHS QTMSYSYAAI LSNAPSFPIK PSNVEVVFDH QITMTATTDD SASNKLKSKE 300 DSLNDFDGGN GNSSSGIYQS ESMWKHHQQY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	18	184	17	159	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	18	184	17	159	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	18	184	17	159	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	18	184	17	159	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	18	184	20	162	NAC domain-containing protein 19
3swm_B	1e-40	18	184	20	162	NAC domain-containing protein 19
3swm_C	1e-40	18	184	20	162	NAC domain-containing protein 19
3swm_D	1e-40	18	184	20	162	NAC domain-containing protein 19
3swp_A	1e-40	18	184	20	162	NAC domain-containing protein 19
3swp_B	1e-40	18	184	20	162	NAC domain-containing protein 19
3swp_C	1e-40	18	184	20	162	NAC domain-containing protein 19
3swp_D	1e-40	18	184	20	162	NAC domain-containing protein 19
4dul_A	1e-40	18	184	17	159	NAC domain-containing protein 19
4dul_B	1e-40	18	184	17	159	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450146.1	9e-76	PREDICTED: NAC domain-containing protein 21/22
Swissprot	Q84TE6	3e-72	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A3P6BS46	5e-73	A0A3P6BS46_BRAOL; Uncharacterized protein
STRING	Bo3g185760.1	5e-73	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	2e-70	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	Kalax.0090s0019.1.p

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]