PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0090s0060.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 596aa    MW: 64145.9 Da    PI: 8.7273
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0090s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14106145242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g++C++ C+C +C+N+ e+
  Kalax.0090s0060.1.p 106 RQKQCNCKHSKCLKLYCECFASGTYCEN-CNCVNCHNNMEH 145
                          689************************9.********9875 PP
2TCR512.8e-16190229140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Kalax.0090s0060.1.p 190 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 229
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17105145IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.413106230IPR005172CRC domain
PfamPF036384.9E-11107142IPR005172CRC domain
SMARTSM011143.5E-20190231IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13193228IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MMEGKDLVPK IGIPSALMSL DVPHKKLARQ LDFNVVSSGH ATAVPIQPSG NPAAPPPRHV  60
VASMTVAPPP PPPPSPLLPT VTPQPTMPPV KPESPKSKTK DGTPKRQKQC NCKHSKCLKL  120
YCECFASGTY CENCNCVNCH NNMEHEASRR EAVEATLERN PNAFRPKIAG SPQVNRAAKE  180
ATGDLLLLAK HNKGCHCKKS GCLKKYCECF QANILCSENC KCIDCKNFEG SEERKAIHGD  240
QATNMAYIQQ AANAAITGAV GLSGFISPPL TKRRKGPDIF FGSSSNDLSK IEHIERANTG  300
KSPAPSNSSL TPVTCPVKLT PPSHSKFTYS SLLADIIQPH DLKELCSNMV VMSREVAKTY  360
SAQENAPAHK ATERRIVIPT PNQNIPRTHN EAATENPTTS ENSGAISLNN DKPDCSRPDS  420
VDMLDRPLSP GTLALMCDEH DELFVANATP NRLTGQSGHL GLQLPNGYEM TEVYAEQEKV  480
VMSKLRDTLN RLIYFGEIKE RKFSALARSE AGQKDAFRNS SISGRHGTVN QPIPMQTSNS  540
KNTAPAAATH VGTGAASSTT GTAASLVFSN SISPHIKISS IGRTGNMKPK IEQHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-3110723711130Protein lin-54 homolog
5fd3_B4e-3110723711130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451190.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_006475649.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-151TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLV4UJK80.0V4UJK8_9ROSI; Uncharacterized protein
STRINGXP_006475649.10.0(Citrus sinensis)
STRINGXP_006451190.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-138Tesmin/TSO1-like CXC domain-containing protein