PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0091s0044.6.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 257aa MW: 27892.5 Da PI: 8.0759

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0091s0044.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.3e-10	158	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Kalax.0091s0044.6.p 158 SHSLAERARREKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 205 8***********************9....566***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.68E-17	152	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.58E-8	152	205	No hit	No description
PROSITE profile	PS50888	15.466	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	154	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-7	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-8	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MELPLVNESS FTPASPASYS LEDFWPLGAG IGNHARVLGL RTANSERAGL GNRDGSAEES 60 TVTDQSFSRN GGGGRKRRLA DESSKVGEAS GGAGQLKTSS TKRVNILELK EEQKSMKDEV 120 DGTSVTGAKH AEQSTKVSEP PKLDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCSKVIGK ALVLDEIINY VQSLQYQVEF LSMKLEAVNS SIVPKDKMLP AKDVSYHACL 240 TVNFMICQVE LDSLAR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882712.1	2e-85	transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	5e-60	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1S3BUZ6	2e-82	A0A1S3BUZ6_CUCME; transcription factor bHLH79
STRING	XP_008453158.1	3e-83	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0091s0044.6.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]