PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0091s0063.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 524aa    MW: 57061.1 Da    PI: 7.4794
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0091s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14e-17143229186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L+ea+ ++  +l++g+l++ +Weev+  +re+     +s +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  Kalax.0091s0063.1.p 143 EWSDTAIGCLLEAYMSKYAQLNKGNLRGRDWEEVAGMVREGCQkqAKSVEQCKNKVDNLKKRYKLERHRMSSG-GVSTSHWPWFQKME 229
                          5**********************************998765442256999**********************9.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-19141231No hitNo description
SMARTSM005950.0051151236IPR006578MADF domain
Gene3DG3DSA:3.40.1160.108.9E-65266516IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.621281517IPR015963Uridylate kinase, bacteria
SuperFamilySSF536335.89E-50282516IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.46E-95284517No hitNo description
PfamPF006962.2E-19285496IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MASCDDDFPL LPDDRHHHHQ QQQQSHPQFQ HQGFYRLNRF INKVATATTA RSPICGGRDE  60
GSERFADLSF TAKCASAFPD VAPFSGDEEA GEEEEAANQS CGRKEREEVS DGTALYKRSK  120
IGEGSGSGSA APGGGDYRRD REEWSDTAIG CLLEAYMSKY AQLNKGNLRG RDWEEVAGMV  180
REGCQKQAKS VEQCKNKVDN LKKRYKLERH RMSSGGVSTS HWPWFQKMEE IFGDLVPRNT  240
ADLEEDKAVQ SSSRQAKRYS VATANPVSPL LNVRMKQAPR LRWRRVVFKI SGVALAGTGS  300
GSNNFDPEVA RLIASEVAKA SRAGVEVAIV VGGRNLFCGD TWVTATGSDR STAYQIGMMA  360
TVMNSILLQS AMEKMGIQAR VQSGLIVQES AEPYNRQRAI RHLEKGRIVI FGGVGVGIGN  420
PLFSTDTAAA LRASEIHAEA VLKGANADGL YGCNSGNNSI FEHISFRALG SRGANFMDMM  480
ALSYCEENSI PVVVFNLLEP GNISKAICGE QVGTLIDQTG RIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-532815167239Uridylate kinase
3ek5_B4e-532815167239Uridylate kinase
3ek5_C4e-532815167239Uridylate kinase
3ek5_D4e-532815167239Uridylate kinase
3ek5_E4e-532815167239Uridylate kinase
3ek5_F4e-532815167239Uridylate kinase
3ek6_A4e-532815167239Uridylate kinase
3ek6_B4e-532815167239Uridylate kinase
3ek6_C4e-532815167239Uridylate kinase
3ek6_D4e-532815167239Uridylate kinase
3ek6_E4e-532815167239Uridylate kinase
3ek6_F4e-532815167239Uridylate kinase
3nwy_A6e-5328351650279Uridylate kinase
3nwy_B6e-5328351650279Uridylate kinase
3nwy_C6e-5328351650279Uridylate kinase
3nwy_D6e-5328351650279Uridylate kinase
3nwy_E6e-5328351650279Uridylate kinase
3nwy_F6e-5328351650279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277826.10.0PREDICTED: uncharacterized protein LOC100264768 isoform X2
TrEMBLF6HKF70.0F6HKF7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-173Trihelix family protein