PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0092s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 222aa    MW: 23386.3 Da    PI: 10.1572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0092s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-211868155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++aa+ +++g
  Kalax.0092s0034.1.p 18 PHFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDAAAIEFRG 68
                         689*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.67E-191876No hitNo description
PfamPF008471.4E-141868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-331976IPR001471AP2/ERF domain
SMARTSM003801.7E-391982IPR001471AP2/ERF domain
PROSITE profilePS5103224.3021976IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-231977IPR016177DNA-binding domain
PRINTSPR003674.3E-112031IPR001471AP2/ERF domain
PRINTSPR003674.3E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAPKTVEKKA AAAGIKEPHF RGVRKRPWGR YAAEIRDPTK KSRVWLGTFD TAEEAARAYD  60
AAAIEFRGTK AKTNFPMPGG ASAATPHLSP SQSSTVESSS RESHAPAVTS ILDLSLKTGS  120
PAAAYGGPIR FPFQHFQLAA ASPSLLPAAN MFFFNPVARC ARPVTFRSYP NIQTAVTGTN  180
FNGPALSDSD SSSVVDTSSP TSTAAVLDID LNFPPRDTTA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221677264ATERF1
3gcc_A1e-221677264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026393964.14e-50ethylene-responsive transcription factor 4-like
SwissprotQ404779e-41ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLE7FKW32e-44E7FKW3_TOBAC; Ethylene response factor 6b
STRINGXP_009618542.13e-45(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-26erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]