PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0092s0091.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 322aa    MW: 36541.7 Da    PI: 5.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0092s0091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19118168155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ +l+g
  Kalax.0092s0091.1.p 118 KKYRGVRQRP-WGKWAAEIRDPQ----RrVRLWLGTYNTAEEAAMVYDNAAIQLRG 168
                          59********.**********93....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.37E-33118178No hitNo description
Gene3DG3DSA:3.30.730.104.4E-31119176IPR001471AP2/ERF domain
PfamPF008473.3E-13119168IPR001471AP2/ERF domain
PROSITE profilePS5103224.447119176IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22119177IPR016177DNA-binding domain
SMARTSM003801.3E-38119182IPR001471AP2/ERF domain
PRINTSPR003672.1E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.1E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEVQKEMFNQ VKYTEHKEAS TIVLHDQSDL PKVLRISLTD SYATDSSSDE EQLQRSLARR  60
VRIKKYVHEI SIKPSGTHAE NTSENRLPKK CRKLAGKTYN QPSQTQSKTT IPSRRIEKKY  120
RGVRQRPWGK WAAEIRDPQR RVRLWLGTYN TAEEAAMVYD NAAIQLRGPD ALTNFPPHLT  180
HIQQMQTQKK LEIIDTTTSG KDSQSPRVCS PTSVLRFQSE SAESQLSETQ EEDKGKTGIL  240
NDFAEELDSF LHQNDAFNLD FFPDSCIPND TSFLSQDFGV EDFLMCEPSF GYGSLSSKWG  300
SDDFFQQDIG DLFGSDPLVA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22118176160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22118176463ATERF1
3gcc_A5e-22118176463ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746165.12e-70ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2J6JNU44e-69A0A2J6JNU4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-63cytokinin response factor 2