PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0093s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 402aa    MW: 45284.5 Da    PI: 8.1547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0093s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-14196247155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h  +Er+RR+++ + +  Lr llP+a   +++K + a+i+  A++YIk+L+
  Kalax.0093s0009.1.p 196 QRMTHIDIERNRRRQMSEYLGVLRPLLPPA---YAQKGDQASIVGGAIDYIKKLE 247
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.98E-12193251No hitNo description
SuperFamilySSF474592.52E-17194264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.605195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-14196263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSRPPLLRKL NPSYQFQADF EFISTFSKSC KMDKFSHSFI HPYFLFCSYM QVDCREQLGL  60
CVECLVGPSA STDSLSASLG LGDRMPFLRM LQTLDPSSLQ SPSRKYQPKA ENQVLEVDSC  120
LTHDMPDLHS PVMSEGKNPT RASPDGILEE KGELNSVNEC RQNSGSEKQA LLSCGRKRKP  180
KRTKEVVENK MDKEKQRMTH IDIERNRRRQ MSEYLGVLRP LLPPAYAQKG DQASIVGGAI  240
DYIKKLEQLL QSLQAQKRQT KMEDEMRRRS NSIPTPPETS DALSTSTSSP SASLDENSLE  300
HGKKADVNIR VVQTHVNLHI ECDDVKQSQL IKLLIALEEL GLTILHLNIT SRHKSSFYSL  360
SLKVEEESKV RSAEEVSASI EKVLNSINIS DERRSSVRNQ N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196207RMTHIDIERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-49bHLH family protein