PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0093s0064.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 260aa    MW: 27337.7 Da    PI: 8.1635
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0093s0064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601301e-40191181100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+kll ++pe +r da++slvyeA++r+rdPvyG++g i +lqqql++l
  Kalax.0093s0064.1.p  19 PCAACKLLRRRCAEECPFSPYFSPHEPHKFLAVHKVFGASNVSKLLLEVPEGQRADAANSLVYEANVRLRDPVYGCMGAIAALQQQLHSL 108
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+l+++++e
  Kalax.0093s0064.1.p 109 QAQLDAVRSE 118
                          *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.49218119IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-4119116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEKRVHLLGP AVALNKVTPC AACKLLRRRC AEECPFSPYF SPHEPHKFLA VHKVFGASNV  60
SKLLLEVPEG QRADAANSLV YEANVRLRDP VYGCMGAIAA LQQQLHSLQA QLDAVRSEIL  120
KHDIIRSQAA AAPSSSAPTV TITTTNSSTI TVAAAAADNS NNNISISTHH HHLIRSPSSG  180
GTLSAVAMLL PPSEQPQRPL TPPLHPAASA QSAPSNSSSS SSTSSTAVTI SSLYSTQQPN  240
TSSSIGFSTN NNDGYMCFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-431912211114LOB family transfactor Ramosa2.1
5ly0_B1e-431912211114LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945145.13e-71LOB domain-containing protein 15
RefseqXP_016179225.13e-71LOB domain-containing protein 15
RefseqXP_025684516.13e-71LOB domain-containing protein 15
TrEMBLA0A2P5AHJ86e-72A0A2P5AHJ8_TREOI; Wilm's tumor protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-56LOB domain-containing protein 15