PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0094s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 360aa    MW: 39785.3 Da    PI: 9.1498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0094s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16790694
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                   B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94
                         +++d ++++ l lp+kf++++g + ++   ++l+ ++  +W+v++  +k+s++++l+kGW +F+++ g++ g f+vF +d   + f  +v
  Kalax.0094s0045.1.p  7 ITADITTRSKLKLPRKFVKRYGANVPR--NVRLQVPTRAEWRVEV--KKNSDGVWLGKGWVKFAESLGIRYGHFLVFDYDVVhDVF--HV 90
                         5789999999***********888555..6***************..*******************************98653555..55 PP
2B358.71e-182683511499
                          T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          g + +p +f++++ +++    k+ tl++++grsW vk++  k++ + ++t+GWk+F+ + +Lk+gD+++F+l+g  e  l v +fr+
  Kalax.0094s0045.1.p 268 GPVLVPASFIQAYfNLS---IKDATLRTKDGRSWLVKYNLAKGRHESYFTSGWKQFAIDTDLKTGDVCLFELIGGAENALQVVIFRA 351
                          55678999999995333...3589**************999999999**************************99777799999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.435296IPR003340B3 DNA binding domain
CDDcd100174.50E-17394No hitNo description
SMARTSM010193.9E-14396IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-183103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-18396IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-13783IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19238351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-17244351IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-12246352IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451255352IPR003340B3 DNA binding domain
PfamPF023622.5E-17267351IPR003340B3 DNA binding domain
CDDcd100171.08E-17272350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKFFRIITAD ITTRSKLKLP RKFVKRYGAN VPRNVRLQVP TRAEWRVEVK KNSDGVWLGK  60
GWVKFAESLG IRYGHFLVFD YDVVHDVFHV LALDMSAVEI EYPTVSSIDD NEEEDLSGSR  120
FALKRPKVED EDGDVVIVNK DGANLGSKRR ASAGQAPSGE PASKKATPSK VDQNTCGNVI  180
VRTDDEKLKT DRNTLQIQRG CYGRETMLNS EGRIRCVVQG RRNGYGEQTK IALERAKAFK  240
AEEPVCIITL PPSCVGQESP AGAATNQGPV LVPASFIQAY FNLSIKDATL RTKDGRSWLV  300
KYNLAKGRHE SYFTSGWKQF AIDTDLKTGD VCLFELIGGA ENALQVVIFR AMGGADVCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-18B3 family protein