PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0095s0062.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 304aa MW: 33756.6 Da PI: 10.6658

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0095s0062.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	293.6	8e-90	7	303	31	301
GAGA_bind 31 siaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla......salpvgvqvlsgtksidslqql 114 ++++r++++rern+a++e k+a+aerd a l+rd+a+++r++a ++rdn +++l+++++s++ + + +gv+v++g+k++++lqq+ Kalax.0095s0062.1.p 7 VLSQRNDAVRERNMAIAEVKQAMAERDRAILERDAAFTDRDHARMQRDNVIAQLQHKTDSMNtsivihNPSESGVSVSQGAKQMQMLQQQ 96 6789***************************************************999998888443344567788999999999997 PP GAGA_bind 115 sepqledsavelreee.klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader................. 186 +++q +++ + +e + + p ++ ++++ ++k+ k +++k++ke+k+ ++kk + k+ +k +k++++ + Kalax.0095s0062.1.p 97 QQQQRRQHLPNYSEVAfNPREVPFSDVFPQSSAASKTTKARKGKRAKETKTVSPKK-PLKPARKIAKKGTRASskqltatphhssddgts 185 76444444444333330234455566666666666666666666666666666665.4444444444443322345677888999999 PP GAGA_bind 187 ...skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 k+ + +l+ln+ lD+ +lPvP CsCtG+++ CYkWG GGWqSaCCtt++S+yPLP+++++r++R++grKmS+gaf+kl+ +La Kalax.0095s0062.1.p 186 gilDKQIVLKGGLSLNELGLDDVNLPVPFCSCTGKPQSCYKWGKGGWQSACCTTALSMYPLPQMPNKRHSRMGGRKMSGGAFTKLITRLA 275 998788888889**************************************************************************** PP GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301 +eGyd+ p+DLk+hWAkHGtn+++ ir Kalax.0095s0062.1.p 276 SEGYDITVPIDLKNHWAKHGTNRYIIIR 303 ************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	5.2E-93	1	303	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.3E-80	8	303	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDPYFAVLSQ RNDAVRERNM AIAEVKQAMA ERDRAILERD AAFTDRDHAR MQRDNVIAQL 60 QHKTDSMNTS IVIHNPSESG VSVSQGAKQM QMLQQQQQQQ RRQHLPNYSE VAFNPREVPF 120 SDVFPQSSAA SKTTKARKGK RAKETKTVSP KKPLKPARKI AKKGTRASSK QLTATPHHSS 180 DDGTSGILDK QIVLKGGLSL NELGLDDVNL PVPFCSCTGK PQSCYKWGKG GWQSACCTTA 240 LSMYPLPQMP NKRHSRMGGR KMSGGAFTKL ITRLASEGYD ITVPIDLKNH WAKHGTNRYI 300 IIR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016702980.1	2e-98	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
TrEMBL	A0A1U8KKL4	5e-97	A0A1U8KKL4_GOSHI; protein BASIC PENTACYSTEINE6-like isoform X2
STRING	Gorai.002G124900.1	3e-97	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-72	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Kalax.0095s0062.1.p