PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0097s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 305aa    MW: 33409.9 Da    PI: 6.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0097s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11122168455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++ErrRR+++ ++f  L  ++P +     kK +Ka++L  +++Y+++++
  Kalax.0097s0019.1.p 122 DHIMAERRRREKLSQRFIALSAIVPGL-----KKTDKASVLGDTIKYLRQME 168
                          699************************.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-9122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-12123172No hitNo description
SuperFamilySSF474591.24E-15123189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDVPNFNSLS YQEGSRHVNQ WVSLSSLDHG RFMDADGGLQ VQAGSWNSGM QNSNSSTGSN  60
VSFVGMGYGN GLQMPKEEVS SWEDASPFAS PESMSVPMPV PRSPLGVVKT QPVSRAGGDA  120
QDHIMAERRR REKLSQRFIA LSAIVPGLKK TDKASVLGDT IKYLRQMEER VKSLEEEAKQ  180
KTVHSMVLQV KKPQLLPSRD EAPSSEPETD SFHTSFNDAL PEIEARICDK SVLIRIVCEK  240
RQGGVVEQVL AEVEKLHLTI INSSVLSFGA SSLNIIIVAQ INPQFCKTIK EIVMTMFSSL  300
QNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13122180866Transcription factor MYC2
5gnj_B7e-13122180866Transcription factor MYC2
5gnj_E7e-13122180866Transcription factor MYC2
5gnj_F7e-13122180866Transcription factor MYC2
5gnj_G7e-13122180866Transcription factor MYC2
5gnj_I7e-13122180866Transcription factor MYC2
5gnj_M7e-13122180866Transcription factor MYC2
5gnj_N7e-13122180866Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERRRRE
2127132RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.18e-70transcription factor bHLH25-like
RefseqXP_015388301.18e-70transcription factor bHLH25-like
TrEMBLA0A2H5QA052e-68A0A2H5QA05_CITUN; Uncharacterized protein
STRINGXP_006486799.13e-69(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-56bHLH family protein