PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0097s0019.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 273aa    MW: 29719.9 Da    PI: 6.5276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0097s0019.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-1190136455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++ErrRR+++ ++f  L  ++P +     kK +Ka++L  +++Y+++++
  Kalax.0097s0019.2.p  90 DHIMAERRRREKLSQRFIALSAIVPGL-----KKTDKASVLGDTIKYLRQME 136
                          699************************.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.48886135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-990136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1690148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-1291140No hitNo description
SuperFamilySSF474591.01E-1591157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1392141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDADGGLQVQ AGSWNSGMQN SNSSTGSNVS FVGMGYGNGL QMPKEEVSSW EDASPFASPE  60
SMSVPMPVPR SPLGVVKTQP VSRAGGDAQD HIMAERRRRE KLSQRFIALS AIVPGLKKTD  120
KASVLGDTIK YLRQMEERVK SLEEEAKQKT VHSMVLQVKK PQLLPSRDEA PSSEPETDSF  180
HTSFNDALPE IEARICDKSV LIRIVCEKRQ GGVVEQVLAE VEKLHLTIIN SSVLSFGASS  240
LNIIIVAQIN PQFCKTIKEI VMTMFSSLQN SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1390148866Transcription factor MYC2
5gnj_B4e-1390148866Transcription factor MYC2
5gnj_E4e-1390148866Transcription factor MYC2
5gnj_F4e-1390148866Transcription factor MYC2
5gnj_G4e-1390148866Transcription factor MYC2
5gnj_I4e-1390148866Transcription factor MYC2
5gnj_M4e-1390148866Transcription factor MYC2
5gnj_N4e-1390148866Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499ERRRRE
295100RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.12e-70transcription factor bHLH25-like
RefseqXP_015388301.12e-70transcription factor bHLH25-like
TrEMBLA0A2H5QA055e-69A0A2H5QA05_CITUN; Uncharacterized protein
STRINGXP_006486799.17e-70(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-57bHLH family protein