PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0097s0058.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BES1

Protein Properties

Length: 687aa MW: 77002.1 Da PI: 5.9213

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0097s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	132.4	5.1e-41	62	170	1	109
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 ggs+r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++A +reAGw+v +DGtt+++ s+ + + a ++ ++ s Kalax.0097s0058.1.p 62 GGSRRRRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAAVAREAGWTVLPDGTTFPARSQAPrPLNGAPNTITTSS 151 689*******************************************************************66666524444455555555 PP DUF822 90 pesslqsslkssalaspves 109 p+ +q + +s+l+ +s Kalax.0097s0058.1.p 152 PSVTMQ-PIPASSLRGESPS 170 555555.2333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.9E-37	63	181	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	6.16E-173	242	683	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	6.9E-194	245	681	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	7.8E-104	251	668	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	282	296	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	303	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	325	346	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	329	337	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	1.3E-5	408	417	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.9E-71	418	440	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	491	510	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	525	541	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	542	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-71	560	583	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.3E-5	563	573	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.9E-71	600	622	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.3E-5	651	665	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	1.3E-5	666	680	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MVTEMQKMLC LSEDDDEEDD MGVKEEGNEE SRNNAMMMGG VGDGMGNSHF QHHPQEQSSS 60 QGGSRRRRPL EEKERTKLRE RHRRAITARI LAGLRRHGNY NLRVRADIND VIAAVAREAG 120 WTVLPDGTTF PARSQAPRPL NGAPNTITTS SPSVTMQPIP ASSLRGESPS YPNSADYNAC 180 RLKGVYMSCD MPYDLSSNEM SHTSLVGDGC GQTGDLPLID GSMGSIDKQI IEMPTRLQER 240 GFAGTSYIPV YVMLPLGVIN LKCEIVDPDG LVRQLRLLKS ADVDGVMVEC WWGIVEAHAP 300 LDYNWNDYKK LFQIVRELKL KLQVVMSFHE CGGNVGDDVC IPLPHWVVEV GQSNPDIFFT 360 DREGRRNPEC LTWGIDKQRV LKGRTAIEVY FDFMKSFRVE FHQFFEDGCI SMIQVGLGPC 420 GHLRYPSYPI KHGWRYPGVG QFQCYDQYLL KNLATAAEAR GHSFWGRAPD NAGSYNSRPF 480 ETGFFCDGGD YDGYHGRFFL SWYSQVLVDH GDQVLSLAKL AFEGTPIAAK LPGIHWWYKT 540 VSHAAEITAG FHNPSNRDGY APIVAMLKKH GAIVNFTCVE VPVFSEHEEV SEAFADSDGL 600 VWQVMNAAWD AGIPVASENC LPCYDGEAYN KILDIAKPFN NPDGQHLCTF NYIRLSLHLM 660 EQNNLMEFDR FVKKMHGETT LNHQIR*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MVTEMQKMLC LSEDDDEEDD MGVKEEGNEE SRNNAMMMGG VGDGMGNSHF QHHPQEQSSS  60
QGGSRRRRPL EEKERTKLRE RHRRAITARI LAGLRRHGNY NLRVRADIND VIAAVAREAG  120
WTVLPDGTTF PARSQAPRPL NGAPNTITTS SPSVTMQPIP ASSLRGESPS YPNSADYNAC  180
RLKGVYMSCD MPYDLSSNEM SHTSLVGDGC GQTGDLPLID GSMGSIDKQI IEMPTRLQER  240
GFAGTSYIPV YVMLPLGVIN LKCEIVDPDG LVRQLRLLKS ADVDGVMVEC WWGIVEAHAP  300
LDYNWNDYKK LFQIVRELKL KLQVVMSFHE CGGNVGDDVC IPLPHWVVEV GQSNPDIFFT  360
DREGRRNPEC LTWGIDKQRV LKGRTAIEVY FDFMKSFRVE FHQFFEDGCI SMIQVGLGPC  420
GHLRYPSYPI KHGWRYPGVG QFQCYDQYLL KNLATAAEAR GHSFWGRAPD NAGSYNSRPF  480
ETGFFCDGGD YDGYHGRFFL SWYSQVLVDH GDQVLSLAKL AFEGTPIAAK LPGIHWWYKT  540
VSHAAEITAG FHNPSNRDGY APIVAMLKKH GAIVNFTCVE VPVFSEHEEV SEAFADSDGL  600
VWQVMNAAWD AGIPVASENC LPCYDGEAYN KILDIAKPFN NPDGQHLCTF NYIRLSLHLM  660
EQNNLMEFDR FVKKMHGETT LNHQIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1v3h_A	1e-154	246	678	10	444	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273843.1	0.0	PREDICTED: beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	F6I626	0.0	F6I626_VITVI; Beta-amylase
STRING	VIT_15s0046g02640.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Kalax.0097s0058.1.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]