PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0097s0069.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 319aa    MW: 35322.2 Da    PI: 6.6507
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0097s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.5e-1551140186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +     + ++  ++  qCk++++ ++k+yk +k  +   +s+   ++p+f++l
  Kalax.0097s0069.1.p  51 CWSEAATSVLIDAWGERYLALSRGNLKQKHWKEVADIVsssgeMCGKTPKTDMQCKNRIDTVKKKYKLEKSKMVASASPP-CSWPFFHKL 139
                          7***************************************999999************************9999874444.47******9 PP

             trihelix  86 e 86 
                          e
  Kalax.0097s0069.1.p 140 E 140
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2349141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDYDDDDDD TPTPDPNDGR ITVSLAADAV SADHLGHNAK PSSGGGARED CWSEAATSVL  60
IDAWGERYLA LSRGNLKQKH WKEVADIVSS SGEMCGKTPK TDMQCKNRID TVKKKYKLEK  120
SKMVASASPP CSWPFFHKLE FLIGPAKSPA PTRTHSNLHN TFKKQQQPPA RQDSDSSETD  180
SPDSTDTDPP KPAKKQRFNH PISTATSHPN GKMNINTRGG SSSVGDLTEA ILNLAQVYEQ  240
AENAKLRLVV DMEKHRMNFT KELESQRMQL FVKTQMEITQ MKESAMRDSG DNHLHSQLHT  300
SETNRVSNNI DNRISDST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068832.11e-72trihelix transcription factor ASIL2
TrEMBLA0A2G9I2A22e-72A0A2G9I2A2_9LAMI; Transcription factor GT-2
STRINGcassava4.1_009403m1e-68(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-46sequence-specific DNA binding transcription factors