PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0097s0071.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 447aa    MW: 48587.8 Da    PI: 9.7467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0097s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09333381348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g W+ I r+      +R+  ++k++w+++l
  Kalax.0097s0071.1.p 333 AWTLSEVMKLVEGVSRYGAGKWSEIKRYSFtsyPHRSSVDLKDKWRNLL 381
                          7***************************999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.204326385IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-13328384IPR009057Homeodomain-like
SMARTSM007173.6E-9330383IPR001005SANT/Myb domain
CDDcd116606.03E-20332382No hitNo description
SuperFamilySSF466892.77E-16332388IPR009057Homeodomain-like
PfamPF002499.4E-7333381IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MLESSSIDAG ADARSEPAPV ETTGSTSSLK TIGSLPAAAD TKNFPDDVSA YPDFSILDGH  60
LCLDTLSVRE LHQAFRATFG RQTASKDKLW LKRRIAMALS NSCQIPTMNF LIKDHKVTLI  120
TGLGAHAGVD EVPGGLINDA SSDKHQHQMP QVPEANVSTT EPAANPSLDQ SLSGDGLQSD  180
HKAAKRVRKP TKRYIEELSE IESNQVGRRP SPSVKMPGQG QTLHTSHQTS ITNVYPHAKV  240
AVTRLDSIGG SGVQVPFVSR IRRCRPRENI TSLLPKCPQE NRESPVADVS RLNQKHGQEM  300
ESKSTEGASG TFDGVPVAVP HLTGEMSRKH HRAWTLSEVM KLVEGVSRYG AGKWSEIKRY  360
SFTSYPHRSS VDLKDKWRNL LRASFAGSSH ENRGACSRKQ TQAPLPAPIL SKVRELAERQ  420
AQTPPPINNP TKMMGNCEKG PGSGYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-88TRF-like 6