PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0097s0089.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 109aa    MW: 12421.9 Da    PI: 8.4571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0097s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-095698145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         ++r++++E+ l+ + +++ G + W +Ia +++ gRt++++  +w 
  Kalax.0097s0089.1.p 56 KLRFSEDEETLINRMFNLVGQR-WGLIAGRIP-GRTAEEIEKYWT 98
                         78*******************9.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2E-555103IPR001005SANT/Myb domain
PROSITE profilePS500906.55156101IPR017877Myb-like domain
PfamPF002496.4E-85798IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-105899IPR009057Homeodomain-like
CDDcd001673.76E-65897No hitNo description
SuperFamilySSF466894.24E-858101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MYIYSHVRQS PIMYSTKSHL INHTFCSEDP SMAKAKALAE AETSSSTSDT LTGSSKLRFS  60
EDEETLINRM FNLVGQRWGL IAGRIPGRTA EEIEKYWTSR YYQHSQHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529738.13e-26MYB-like transcription factor ETC1
RefseqXP_028808399.13e-26MYB-like transcription factor ETC1
TrEMBLB9SUR97e-25B9SUR9_RICCO; Triptychon and cpc, putative
STRINGXP_002529738.11e-25(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.14e-18MYB_related family protein