PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0100s0071.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 326aa MW: 36227.8 Da PI: 4.4782

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0100s0071.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.3	8.3e-14	102	147	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+++++ + + lG+g+W+ I+rt +++t q+ s+ qky Kalax.0100s0071.1.p 102 SKWTEDEHKRFLAGLQALGKGDWRGISRTYVLTKTSSQVASHAQKY 147 58*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.19	12	64	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	4.704	15	62	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.76E-6	15	67	IPR009057	Homeodomain-like
CDD	cd00167	2.44E-4	15	56	No hit	No description
PROSITE profile	PS51294	13.838	93	152	IPR017930	Myb domain
SuperFamily	SSF46689	2.32E-14	97	152	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-6	100	150	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-9	102	147	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.7E-16	102	151	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.0E-7	103	147	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-7	103	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MESQLDPQAP APAASWTRAD DKQFESLLVE FPEGCANRFE LVASRLPGKS VDEVVKLYED 60 LVADVEAIEA GLFPRPKHIG GDRRNEGSNL QKAPTQRKNT SSKWTEDEHK RFLAGLQALG 120 KGDWRGISRT YVLTKTSSQV ASHAQKYFMR QSEEGQKSKR RNSIHDVSLS SSEDANNLRN 180 NPMQQLHEVQ VQQESVIIPR SQFAGPEGPL MDDVDWTSYM QQSVGAAPFS QLVGLELSDD 240 GQQQDQPQAI QPQQLSVDSL IMMQQQPSAA IQSEHQDGDG TVQCQQKDGD DATDHDDQPF 300 PSFDHLDENV LKKHEDLLAD VFSDS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858321.1	1e-44	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_012858322.1	1e-44	PREDICTED: transcription factor DIVARICATA-like
TrEMBL	A0A022Q0F3	3e-43	A0A022Q0F3_ERYGU; Uncharacterized protein
STRING	Migut.F00707.1.p	5e-44	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	5e-45	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Kalax.0100s0071.1.p